Jinbo Xu

According to our database, Jinbo Xu authored at least 128 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Support-Query Mutual Promotion and Classification Correction Network for Few-Shot Object Detection.

Jinbo Xu, Yong Wang, Xiaoyu He, Yiqun Zou

IEEE Signal Process. Lett., 2024

2023

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins.

Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan

Nucleic Acids Res., July, 2023

Improved the heterodimer protein complex prediction with protein language models.

Bo Chen, Ziwei Xie, Jiezhong Qiu, Zhaofeng Ye, Jinbo Xu, Jie Tang

Briefings Bioinform., July, 2023

Improving protein structure prediction using templates and sequence embedding.

Fandi Wu, Xiaoyang Jing, Xiao Luo, Jinbo Xu

Bioinform., January, 2023

InstructBio: A Large-scale Semi-supervised Learning Paradigm for Biochemical Problems.

Fang Wu, Huiling Qin, Siyuan Li, Stan Z. Li, Xianyuan Zhan, Jinbo Xu

CoRR, 2023

Research on the Aesthetic Connotation of New Media Ink Painting Art Based on Grounded Theory.

Wenyi Xu, Jinbo Xu, Zhipeng Zhang

Proceedings of the Design, User Experience, and Usability, 2023

2022

Annotating functional effects of non-coding variants in neuropsychiatric cell types by deep transfer learning.

Boqiao Lai, Sheng Qian, Hanwei Zhang, Siwei Zhang, Anna A. Kozlova, Jubao Duan, Jinbo Xu, Xin He

PLoS Comput. Biol., 2022

ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs.

Lupeng Kong, Fusong Ju, Wei-Mou Zheng, Jianwei Zhu, Shiwei Sun, Jinbo Xu, Dongbo Bu

J. Comput. Biol., 2022

When Geometric Deep Learning Meets Pretrained Protein Language Models.

Fang Wu, Tao Yu, Dragomir Radev, Jinbo Xu

CoRR, 2022

Deep graph learning of inter-protein contacts.

Ziwei Xie, Jinbo Xu

Bioinform., 2022

A tale of solving two computational challenges in protein science: neoantigen prediction and protein structure prediction.

Ngoc Hieu Tran, Jinbo Xu, Ming Li

Briefings Bioinform., 2022

Accurate protein function prediction via graph attention networks with predicted structure information.

Boqiao Lai, Jinbo Xu

Briefings Bioinform., 2022

Analysis of the Attainable Design Paths of Non-heritage Cultural Tourism Immersion Experience - An Example of the Tujia City Living Room Project in Enshi Prefecture.

Jinbo Xu, Yueqing Wei

Proceedings of the HCI International 2022 - Late Breaking Posters, 2022

2021

Deep template-based protein structure prediction.

Fandi Wu, Jinbo Xu

PLoS Comput. Biol., 2021

Fast and effective protein model refinement using deep graph neural networks.

Xiaoyang Jing, Jinbo Xu

Nat. Comput. Sci., 2021

Improved protein structure prediction by deep learning irrespective of co-evolution information.

Jinbo Xu, Matthew McPartlon, Jin Li

Nat. Mach. Intell., 2021

Study of real-valued distance prediction for protein structure prediction with deep learning.

Jin Li, Jinbo Xu

Bioinform., 2021

Improved protein model quality assessment by integrating sequential and pairwise features using deep learning.

Xiaoyang Jing, Jinbo Xu

Bioinform., 2021

ORFLine: a bioinformatic pipeline to prioritize small open reading frames identifies candidate secreted small proteins from lymphocytes.

Fengyuan Hu, Jia Lu, Louise S. Matheson, Manuel D. Díaz-Muñoz, Alexander Saveliev, Jinbo Xu, Martin Turner

Bioinform., 2021

PALM: Probabilistic area loss Minimization for Protein Sequence Alignment.

Fan Ding, Nan Jiang, Jianzhu Ma, Jian Peng, Jinbo Xu, Yexiang Xue

Proceedings of the Thirty-Seventh Conference on Uncertainty in Artificial Intelligence, 2021

XOR-CD: Linearly Convergent Constrained Structure Generation.

Fan Ding, Jianzhu Ma, Jinbo Xu, Yexiang Xue

Proceedings of the 38th International Conference on Machine Learning, 2021

2020

A Web-Based Protocol for Interprotein Contact Prediction by Deep Learning.

Xiaoyang Jing, Hong Zeng, Sheng Wang, Jinbo Xu

Proceedings of the Protein-Protein Interaction Networks, Methods and Protocols., 2020

Automated inference of Boolean models from molecular interaction maps using CaSQ.

Sara Sadat Aghamiri, Vidisha Singh, Aurélien Naldi, Tomás Helikar, Sylvain Soliman, Anna Niarakis, Jinbo Xu

Bioinform., 2020

2019

PredMP: a web server for de novo prediction and visualization of membrane proteins.

Sheng Wang, Shiyang Fei, Zongan Wang, Yu Li, Jinbo Xu, Feng Zhao, Xin Gao

Bioinform., 2019

stance-Based Protein Folding Powered by Deep Learning.

Jinbo Xu

Proceedings of the Research in Computational Molecular Biology, 2019

Transmembrane Topology Identification by Fusing Evolutionary and Co-evolutionary Information with Cascaded Bidirectional Transformers.

Zhen Li, Chongming Ni, Jinbo Xu, Xin Gao, Shuguang Cui, Sheng Wang

Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018

ComplexContact: a web server for inter-protein contact prediction using deep learning.

Hong Zeng, Sheng Wang, Tianming Zhou, Feifeng Zhao, Xiufeng Li, Qing Wu, Jinbo Xu

Nucleic Acids Res., 2018

RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning.

Yujuan Gao, Sheng Wang, Minghua Deng, Jinbo Xu

BMC Bioinform., 2018

Protein threading using residue co-variation and deep learning.

Jianwei Zhu, Sheng Wang, Dongbo Bu, Jinbo Xu

Bioinform., 2018

Predicting protein-protein interactions through sequence-based deep learning.

Somaye Hashemifar, Behnam Neyshabur, Aly A. Khan, Jinbo Xu

Bioinform., 2018

Deep Learning Reveals Many More Inter-protein Residue-Residue Contacts than Direct Coupling Analysis.

Tianming Zhou, Sheng Wang, Jinbo Xu

Proceedings of the Research in Computational Molecular Biology, 2018

2017

A Sparse Learning Framework for Joint Effect Analysis of Copy Number Variants.

Zhiyong Wang, Benika Hall, Jinbo Xu, Xinghua Shi

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model.

Sheng Wang, Siqi Sun, Zhen Li, Renyu Zhang, Jinbo Xu

PLoS Comput. Biol., 2017

Predicting membrane protein contacts from non-membrane proteins by deep transfer learning.

Zhen Li, Sheng Wang, Yizhou Yu, Jinbo Xu

CoRR, 2017

Folding Membrane Proteins by Deep Transfer Learning.

Zhen Li, Sheng Wang, Yizhou Yu, Jinbo Xu

Proceedings of the Research in Computational Molecular Biology, 2017

Folding Large Proteins by Ultra-Deep Learning.

Jinbo Xu

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016

CoinFold: a web server for protein contact prediction and contact-assisted protein folding.

Sheng Wang, Wei Li, Renyu Zhang, Shiwang Liu, Jinbo Xu

Nucleic Acids Res., 2016

RaptorX-Property: a web server for protein structure property prediction.

Sheng Wang, Wei Li, Shiwang Liu, Jinbo Xu

Nucleic Acids Res., 2016

Lynx: a knowledge base and an analytical workbench for integrative medicine.

Dinanath Sulakhe, Bingqing Xie, Andrew Taylor, Mark D'Souza, Sandhya Balasubramanian, Somaye Hashemifar, Steven White, Utpal J. Dave, Gady Agam, Jinbo Xu, Sheng Wang, T. Conrad Gilliam, Natalia Maltsev

Nucleic Acids Res., 2016

Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization.

Somaye Hashemifar, Qixing Huang, Jinbo Xu

J. Comput. Biol., 2016

Network Inference by Learned Node-Specific Degree Prior.

Qingming Tang, Lifu Tu, Weiran Wang, Jinbo Xu

CoRR, 2016

AUCpreD: proteome-level protein disorder prediction by AUC-maximized deep convolutional neural fields.

Sheng Wang, Jianzhu Ma, Jinbo Xu

Bioinform., 2016

ModuleAlign: module-based global alignment of protein-protein interaction networks.

Somaye Hashemifar, Jianzhu Ma, Hammad Naveed, Stefan Canzar, Jinbo Xu

Bioinform., 2016

AUC-Maximized Deep Convolutional Neural Fields for Protein Sequence Labeling.

Sheng Wang, Siqi Sun, Jinbo Xu

Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2016

2015

Protein Homology Detection Through Alignment of Markov Random Fields - Using MRFalign

Jinbo Xu, Sheng Wang, Jianzhu Ma

Springer Briefs in Computer Science, Springer, ISBN: 978-3-319-14914-1, 2015

Urban Land Use and Land Cover Classification Using Remotely Sensed SAR Data through Deep Belief Networks.

Qi Lv, Yong Dou, Xin Niu, Jiaqing Xu, Jinbo Xu, Fei Xia

J. Sensors, 2015

Disease Gene Prioritization Using Network and Feature.

Bingqing Xie, Gady Agam, Sandhya Balasubramanian, Jinbo Xu, T. Conrad Gilliam, Natalia Maltsev, Daniela Börnigen

J. Comput. Biol., 2015

AUC-maximized Deep Convolutional Neural Fields for Sequence Labeling.

Sheng Wang, Siqi Sun, Jinbo Xu

CoRR, 2015

Protein secondary structure prediction using deep convolutional neural fields.

Sheng Wang, Jian Peng, Jianzhu Ma, Jinbo Xu

CoRR, 2015

Learning Scale Free Network by Node Specific Degree Prior.

Qingming Tang, Siqi Sun, Chao Yang, Jinbo Xu

CoRR, 2015

Protein contact prediction by integrating joint evolutionary coupling analysis and supervised learning.

Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu

Bioinform., 2015

Structure Learning Constrained by Node-Specific Degree Distribution.

Jianzhu Ma, Feng Zhao, Jinbo Xu

Proceedings of the Thirty-First Conference on Uncertainty in Artificial Intelligence, 2015

Exact Hybrid Covariance Thresholding for Joint Graphical Lasso.

Qingming Tang, Chao Yang, Jian Peng, Jinbo Xu

Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2015

Learning structured densities via infinite dimensional exponential families.

Siqi Sun, Mladen Kolar, Jinbo Xu

Proceedings of the Advances in Neural Information Processing Systems 28: Annual Conference on Neural Information Processing Systems 2015, 2015

A low-latency fine-grained dynamic shared cache management scheme for chip multi-processor.

Jinbo Xu, Weixia Xu, Zhengbin Pang

Proceedings of the 34th IEEE International Performance Computing and Communications Conference, 2015

Classification of Tiangong-1 hyperspectral remote sensing image via contextual sparse coding.

Qi Lv, Yong Dou, Xin Niu, Jiaqing Xu, Jinbo Xu

Proceedings of the 2015 International Conference on Machine Learning and Cybernetics, 2015

Learning Scale-Free Networks by Dynamic Node Specific Degree Prior.

Qingming Tang, Siqi Sun, Jinbo Xu

Proceedings of the 32nd International Conference on Machine Learning, 2015

Predicting diverse M-best protein contact maps.

Siqi Sun, Jianzhu Ma, Sheng Wang, Jinbo Xu

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Joint inference of tissue-specific networks with a scale free topology.

Somaye Hashemifar, Behnam Neyshabur, Jinbo Xu

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Bermuda: de novo assembly of transcripts with new insights for handling uneven coverage.

Qingming Tang, Sheng Wang, Jian Peng, Jianzhu Ma, Jinbo Xu

Proceedings of the 6th ACM Conference on Bioinformatics, 2015

Inferring Block Structure of Graphical Models in Exponential Families.

Siqi Sun, Hai Wang, Jinbo Xu

Proceedings of the Eighteenth International Conference on Artificial Intelligence and Statistics, 2015

2014

FPGA Implementation of a Special-Purpose VLIW Structure for Double-Precision Elementary Function.

Yuanwu Lei, Lei Guo, Yong Dou, Sheng Ma, Jinbo Xu

ACM Trans. Reconfigurable Technol. Syst., 2014

MRFalign: Protein Homology Detection through Alignment of Markov Random Fields.

Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu

PLoS Comput. Biol., 2014

Lynx: a database and knowledge extraction engine for integrative medicine.

Dinanath Sulakhe, Sandhya Balasubramanian, Bingqing Xie, Bo Feng, Andrew Taylor, Sheng Wang, Eduardo Berrocal, Utpal J. Dave, Jinbo Xu, Daniela Börnigen, T. Conrad Gilliam, Natalia Maltsev

Nucleic Acids Res., 2014

Finding Alternative Expression Quantitative Trait Loci by Exploring Sparse Model Space.

Zhiyong Wang, Jinbo Xu, Xinghua Shi

J. Comput. Biol., 2014

HubAlign: an accurate and efficient method for global alignment of protein-protein interaction networks.

Somaye Hashemifar, Jinbo Xu

Bioinform., 2014

Low-latency last-level cache structure based on grouped cores in Chip Multi-Processor.

Jinbo Xu, Weixia Xu, Kefei Wang, Zhengbin Pang

Proceedings of the IEEE 33rd International Performance Computing and Communications Conference, 2014

CNVnet: combining sparse learning and biological networks to capture joint effect of copy number variants.

Zhiyong Wang, Jinbo Xu, Xinghua Shi

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

Adaptive Variable Clustering in Gaussian Graphical Models.

Siqi Sun, Yuancheng Zhu, Jinbo Xu

Proceedings of the Seventeenth International Conference on Artificial Intelligence and Statistics, 2014

2013

VLIW coprocessor for IEEE-754 quadruple-precision elementary functions.

Yuanwu Lei, Yong Dou, Lei Guo, Jinbo Xu, Jie Zhou, Yazhuo Dong, Hongjian Li

ACM Trans. Archit. Code Optim., 2013

From WiFi to WiMAX: Efficient GPU-based Parameterized Transceiver across Different OFDM Protocols.

Rongchun Li, Yong Dou, Jie Zhou, Baofeng Li, Jinbo Xu

KSII Trans. Internet Inf. Syst., 2013

Predicting protein contact map using evolutionary and physical constraints by integer programming (extended version).

Zhiyong Wang, Jinbo Xu

CoRR, 2013

Protein contact prediction by joint evolutionary coupling analysis across multiple families.

Jianzhu Ma, Sheng Wang, Jinbo Xu

CoRR, 2013

Predicting protein contact map using evolutionary and physical constraints by integer programming.

Zhiyong Wang, Jinbo Xu

Bioinform., 2013

Protein threading using context-specific alignment potential.

Jianzhu Ma, Sheng Wang, Feng Zhao, Jinbo Xu

Bioinform., 2013

Achieving Predictable Performance in SMT Processors by Instruction Fetch Policy.

Caixia Sun, Yongwen Wang, Jinbo Xu

Proceedings of the Computer Engineering and Technology - 17th CCF Conference, 2013

An Effective Framework of Program Optimization for High Performance Computing.

Pingjing Lu, Bao Li, Zhengbin Pang, Ying Zhang, Shaogang Wang, Jinbo Xu, Yan Liu

Proceedings of the Computer Engineering and Technology - 17th CCF Conference, 2013

Direction-Optimizing Breadth-First Search on CPU-GPU Heterogeneous Platforms.

Dan Zou, Yong Dou, Qiang Wang, Jinbo Xu, Baofeng Li

Proceedings of the 10th IEEE International Conference on High Performance Computing and Communications & 2013 IEEE International Conference on Embedded and Ubiquitous Computing, 2013

Estimating the Partition Function of Graphical Models Using Langevin Importance Sampling.

Jianzhu Ma, Jian Peng, Sheng Wang, Jinbo Xu

Proceedings of the Sixteenth International Conference on Artificial Intelligence and Statistics, 2013

2012

Approximate Inference by Intersecting Semidefinite Bound and Local Polytope.

Jian Peng, Tamir Hazan, Nathan Srebro, Jinbo Xu

Proceedings of the Fifteenth International Conference on Artificial Intelligence and Statistics, 2012

A Two-Graph Guided Multi-task Lasso Approach for eQTL Mapping.

Xiaohui Chen, Xinghua Shi, Xing Xu, Zhiyong Wang, Ryan Mills, Charles Lee, Jinbo Xu

Proceedings of the Fifteenth International Conference on Artificial Intelligence and Statistics, 2012

A conditional neural fields model for protein threading.

Jianzhu Ma, Jian Peng, Sheng Wang, Jinbo Xu

Bioinform., 2012

2011

Finding Nearly Optimal GDT Scores.

Shuai Cheng Li, Dongbo Bu, Jinbo Xu, Ming Li

J. Comput. Biol., 2011

A conditional random fields method for RNA sequence-structure relationship modeling and conformation sampling.

Zhiyong Wang, Jinbo Xu

Bioinform., 2011

Alignment of distantly related protein structures: algorithm, bound and implications to homology modeling.

Sheng Wang, Jian Peng, Jinbo Xu

Bioinform., 2011

A Parallel Processing Scheme for Large-Size Sliding-Window Applications.

Weixia Xu, Jinbo Xu, Zhengbin Pang

Proceedings of the 13th IEEE International Conference on High Performance Computing & Communication, 2011

2010

Struct2Net: a web service to predict protein-protein interactions using a structure-based approach.

Rohit Singh, Daniel Park, Jinbo Xu, Raghavendra Hosur, Bonnie Berger

Nucleic Acids Res., 2010

A Probabilistic and Continuous Model of Protein Conformational Space for Template-Free Modeling.

Feng Zhao, Jian Peng, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu

J. Comput. Biol., 2010

Fragment-free approach to protein folding using conditional neural fields.

Feng Zhao, Jian Peng, Jinbo Xu

Bioinform., 2010

Low-homology protein threading.

Jian Peng, Jinbo Xu

Bioinform., 2010

Protein 8-class secondary structure prediction using Conditional Neural Fields.

Zhiyong Wang, Feng Zhao, Jian Peng, Jinbo Xu

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009

Finding compact structural motifs.

Dongbo Bu, Ming Li, Shuai Cheng Li, Jianbo Qian, Jinbo Xu

Theor. Comput. Sci., 2009

Predicting Local Quality of a Sequence-Structure Alignment.

Xin Gao, Jinbo Xu, Shuai Cheng Li, Ming Li

J. Bioinform. Comput. Biol., 2009

A Reconfigurable Architecture for Rotation Invariant Multi-View Face Detection Based on a Novel Two-Stage Boosting Method.

Jinbo Xu, Yong Dou, Zhengbin Pang

EURASIP J. Adv. Signal Process., 2009

A Probabilistic Graphical Model for Ab Initio Folding.

Feng Zhao, Jian Peng, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu

Proceedings of the Research in Computational Molecular Biology, 2009

Boosting Protein Threading Accuracy.

Jian Peng, Jinbo Xu

Proceedings of the Research in Computational Molecular Biology, 2009

Conditional Neural Fields.

Jian Peng, Liefeng Bo, Jinbo Xu

Proceedings of the Advances in Neural Information Processing Systems 22: 23rd Annual Conference on Neural Information Processing Systems 2009. Proceedings of a meeting held 7-10 December 2009, 2009

FPGA accelerating three QR decomposition algorithms in the unified pipelined framework.

Yong Dou, Jie Zhou, Xiaoyang Chen, Yuanwu Lei, Jinbo Xu

Proceedings of the 19th International Conference on Field Programmable Logic and Applications, 2009

Implementation of Rotation Invariant Multi-View Face Detection on FPGA.

Jinbo Xu, Yong Dou, Yuxing Tang, Xiaodong Wang

Proceedings of the Advanced Parallel Processing Technologies, 8th International Symposium, 2009

2008

Global alignment of multiple protein interaction networks with application to functional orthology detection.

Rohit Singh, Jinbo Xu, Bonnie Berger

Proc. Natl. Acad. Sci. USA, 2008

Graph algorithms for biological systems analysis.

Bonnie Berger, Rohit Singh, Jinbo Xu

Proceedings of the Nineteenth Annual ACM-SIAM Symposium on Discrete Algorithms, 2008

Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information.

Jing Zhang, Xin Gao, Jinbo Xu, Ming Li

Proceedings of the Research in Computational Molecular Biology, 2008

Global Alignment of Multiple Protein Interaction Networks.

Rohit Singh, Jinbo Xu, Bonnie Berger

Proceedings of the Biocomputing 2008, 2008

Rectangularly Multi-Module Memory System with Table-Based Dynamic Addressing Scheme.

Jinbo Xu, Yong Dou, Jie Zhou

Proceedings of The 2008 IEEE International Conference on Networking, 2008

Designing succinct structural alphabets.

Shuai Cheng Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

Double Precision Hybrid-Mode Floating-Point FPGA CORDIC Co-processor.

Jie Zhou, Yong Dou, Yuanwu Lei, Jinbo Xu, Yazhuo Dong

Proceedings of the 10th IEEE International Conference on High Performance Computing and Communications, 2008

Finding Largest Well-Predicted Subset of Protein Structure Models.

Shuai Cheng Li, Dongbo Bu, Jinbo Xu, Ming Li

Proceedings of the Combinatorial Pattern Matching, 19th Annual Symposium, 2008

Hardware BLAST Algorithms with Multi-seeds Detection and Parallel Extension.

Fei Xia, Yong Dou, Jinbo Xu

Proceedings of the Reconfigurable Computing: Architectures, 2008

Multi-access memory architecture for image applications with multiple interested regions.

Jinbo Xu, Yong Dou, Jie Zhou

Proceedings of the IEEE Asia Pacific Conference on Circuits and Systems, 2008

2007

A Parameterized Algorithm for Protein Structure Alignment.

Jinbo Xu, Feng Jiao, Bonnie Berger

J. Comput. Biol., 2007

Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology.

Rohit Singh, Jinbo Xu, Bonnie Berger

Proceedings of the Research in Computational Molecular Biology, 2007

FPGA Accelerating Algorithms of Active Shape Model in People Tracking Applications.

Jinbo Xu, Yong Dou, Junfeng Li, Xingming Zhou, Qiang Dou

Proceedings of the Tenth Euromicro Conference on Digital System Design: Architectures, 2007

Solving the contact map overlap problem via tree decomposition and a DEE-like pruning strategy.

Jinbo Xu

Proceedings of the 46th IEEE Conference on Decision and Control, 2007

FPGA-Accelerated Active Shape Model for Real-Time People Tracking.

Yong Dou, Jinbo Xu

Proceedings of the Advances in Computer Systems Architecture, 2007

2006

Optimizing Multiple Spaced Seeds for Homology Search.

Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma

J. Comput. Biol., 2006

Fast and accurate algorithms for protein side-chain packing.

Jinbo Xu, Bonnie Berger

J. ACM, 2006

Struct2Net: Integrating Structure into Protein-Protein Interaction Prediction.

Rohit Singh, Jinbo Xu, Bonnie Berger

Proceedings of the Biocomputing 2006, 2006

Robust and real-time automatic target recognition using partial hausdorff distance measure on reconfigurable hardware.

Jinbo Xu, Yong Dou

Proceedings of the 2006 IEEE International Conference on Field Programmable Technology, 2006

2005

Fold Recognition by Predicted Alignment Accuracy.

Jinbo Xu

IEEE ACM Trans. Comput. Biol. Bioinform., 2005

Rapid Protein Side-Chain Packing via Tree Decomposition.

Jinbo Xu

Proceedings of the Research in Computational Molecular Biology, 2005

Discovering Sequence-Structure Motifs from Protein Segments and Two Applications.

Thomas Tang, Jinbo Xu, Ming Li

Proceedings of the Biocomputing 2005, 2005

A Tree-Decomposition Approach to Protein Structure Prediction.

Jinbo Xu, Feng Jiao, Bonnie Berger

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, 2005

Consensus fold recognition by predicted model quality.

Jinbo Xu, Libo Yu, Ming Li

Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005

2004

Protein Threading by Linear Programming: Theoretical Analysis and Computational Results.

Jinbo Xu, Ming Li, Ying Xu

J. Comb. Optim., 2004

2003

Approximation algorithms for NMR spectral peak assignment.

Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Jinbo Xu, Ying Xu

Theor. Comput. Sci., 2003

Raptor: Optimal Protein Threading by Linear Programming.

Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu

J. Bioinform. Comput. Biol., 2003

Speedup LP Approach to Protein Threading via Graph Reduction.

Jinbo Xu

Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003

Protein Threading by Linear Programming.

Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu

Proceedings of the 8th Pacific Symposium on Biocomputing, 2003