Max Kotlyar

According to our database, Max Kotlyar authored at least 15 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

<i>USNAP</i>: fast unique dense region detection and its application to lung cancer.

Serene W. H. Wong, Chiara Pastrello, Max Kotlyar, Christos Faloutsos, Igor Jurisica

Bioinform., August, 2023

MirDIP 5.2: tissue context annotation and novel microRNA curation.

Anne-Christin Hauschild, Chiara Pastrello, Gitta Kirana Anindya Ekaputeri, Dylan Bethune-Waddell, Mark Abovsky, Zuhaib Ahmed, Max Kotlyar, Richard Lu, Igor Jurisica

Nucleic Acids Res., January, 2023

2022

IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis.

Max Kotlyar, Chiara Pastrello, Zuhaib Ahmed, Justin Chee, Zofia Varyova, Igor Jurisica

Nucleic Acids Res., 2022

2020

Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID).

Chiara Pastrello, Max Kotlyar, Igor Jurisica

Proceedings of the Protein-Protein Interaction Networks, Methods and Protocols., 2020

pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species.

Sara Rahmati, Mark Abovsky, Chiara Pastrello, Max Kotlyar, Richard Lu, Christian A. Cumbaa, Proton Rahman, Vinod Chandran, Igor Jurisica

Nucleic Acids Res., 2020

The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions.

Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret J. Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, Kalpana Panneerselvam, Simona Panni, N. Rahimzadeh, Sylvie Ricard-Blum, Lukasz Salwínski, Anjali Shrivastava, Gianni Cesareni, Matteo Pellegrini, Sandra E. Orchard, Igor Jurisica, Henning Hermjakob, Pablo Porras

Database J. Biol. Databases Curation, 2020

2019

Protein-Protein Interaction Databases.

Max Kotlyar, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species.

Max Kotlyar, Chiara Pastrello, Zara Malik, Igor Jurisica

Nucleic Acids Res., 2019

2018

SDREGION: Fast Spotting of Changing Communities in Biological Networks.

Serene W. H. Wong, Chiara Pastrello, Max Kotlyar, Christos Faloutsos, Igor Jurisica

Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining, 2018

2016

Machine Learning for In Silico Modeling of Tumor Growth.

Fleur Jeanquartier, Claire Jean-Quartier, Max Kotlyar, Tomás Tokár, Anne-Christin Hauschild, Igor Jurisica, Andreas Holzinger

Proceedings of the Machine Learning for Health Informatics, 2016

Integrated interactions database: tissue-specific view of the human and model organism interactomes.

Max Kotlyar, Chiara Pastrello, Nicholas Sheahan, Igor Jurisica

Nucleic Acids Res., 2016

2015

Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data.

Kristen Fortney, Joshua Griesman, Max Kotlyar, Chiara Pastrello, Marc Angeli, Ming-Sound Tsao, Igor Jurisica

PLoS Comput. Biol., 2015

2013

NetwoRx: connecting drugs to networks and phenotypes in <i>Saccharomyces cerevisiae</i>.

Kristen Fortney, Wing Xie, Max Kotlyar, Joshua Griesman, Yulia Kotseruba, Igor Jurisica

Nucleic Acids Res., 2013

2011

NAViGaTOR: Large Scalable and Interactive Navigation and Analysis of Large Graphs.

Amira Djebbari, Muhammad Ali, David Otasek, Max Kotlyar, Kristen Fortney, Serene Wong, Anthony Hrvojic, Igor Jurisica

Internet Math., 2011

2006

Predicting Protein-Protein Interactions by Association Mining.

Max Kotlyar, Igor Jurisica

Inf. Syst. Frontiers, 2006