Igor Jurisica

According to our database1, Igor Jurisica authored at least 71 papers between 1992 and 2020.

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Bibliography

2020
Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID).
Proceedings of the Protein-Protein Interaction Networks, Methods and Protocols., 2020

GSOAP: a tool for visualization of gene set over-representation analysis.
Bioinform., 2020

BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways.
Bioinform., 2020

2019
Two Decades of Biological Pathway Databases: Results and Challenges.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Protein-Protein Interaction Databases.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Visualization of Biomedical Networks.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species.
Nucleic Acids Res., 2019

2018
mirDIP 4.1 - integrative database of human microRNA target predictions.
Nucleic Acids Res., 2018

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.
BMC Bioinform., 2018

SDREGION: Fast Spotting of Changing Communities in Biological Networks.
Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining, 2018

Data-driven medicine: promise and challenges.
Proceedings of the 28th Annual International Conference on Computer Science and Software Engineering, 2018

2017
pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis.
Nucleic Acids Res., 2017

Big data analytics: challenges and applications to health care.
Proceedings of the 27th Annual International Conference on Computer Science and Software Engineering, 2017

2016
Machine Learning for In Silico Modeling of Tumor Growth.
Proceedings of the Machine Learning for Health Informatics, 2016

Integrated interactions database: tissue-specific view of the human and model organism interactomes.
Nucleic Acids Res., 2016

Robust quantitative scratch assay.
Bioinform., 2016

A Simulated Annealing Algorithm for Maximum Common Edge Subgraph Detection in Biological Networks.
Proceedings of the 2016 on Genetic and Evolutionary Computation Conference, Denver, CO, USA, July 20, 2016

2015
Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data.
PLoS Comput. Biol., 2015

Where are we at regarding species translation? A review of the sbv IMPROVER challenge.
Bioinform., 2015

2014
Visual Data Mining: Effective Exploration of the Biological Universe.
Proceedings of the Interactive Knowledge Discovery and Data Mining in Biomedical Informatics, 2014

Knowledge Discovery and Data Mining in Biomedical Informatics: The Future Is in Integrative, Interactive Machine Learning Solutions.
Proceedings of the Interactive Knowledge Discovery and Data Mining in Biomedical Informatics, 2014

Knowledge Discovery and interactive Data Mining in Bioinformatics - State-of-the-Art, future challenges and research directions.
BMC Bioinform., 2014

2013
Visual Data Mining of Biological Networks: One Size Does Not Fit All.
PLoS Comput. Biol., 2013

NetwoRx: connecting drugs to networks and phenotypes in <i>Saccharomyces cerevisiae</i>.
Nucleic Acids Res., 2013

Novel semantic similarity measure improves an integrative approach to predicting gene functional associations.
BMC Syst. Biol., 2013

2012
SCRIPDB: a portal for easy access to syntheses, chemicals and reactions in patents.
Nucleic Acids Res., 2012

Construction of New Medicines via Game Proof Search.
Proceedings of the Twenty-Sixth AAAI Conference on Artificial Intelligence, 2012

2011
Ensembles of case-based reasoning classifiers in high-dimensional biological domains.
Wiley Interdiscip. Rev. Data Min. Knowl. Discov., 2011

NAViGaTOR: Large Scalable and Interactive Navigation and Analysis of Large Graphs.
Internet Math., 2011

Cancer Computational Biology.
BMC Bioinform., 2011

A tree-based approach for motif discovery and sequence classification.
Bioinform., 2011

Optimized application of penalized regression methods to diverse genomic data.
Bioinform., 2011

Next-generation, scalable network visualization and analysis.
Proceedings of the Center for Advanced Studies on Collaborative Research, 2011

2010
The FlowVizMenu and Parallel Scatterplot Matrix: Hybrid Multidimensional Visualizations for Network Exploration.
IEEE Trans. Vis. Comput. Graph., 2010

Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I<sup>2</sup>D.
Bioinform., 2010

Runtime Estimation Using the Case-Based Reasoning Approach for Scheduling in a Grid Environment.
Proceedings of the Case-Based Reasoning. Research and Development, 2010

2009
Interaction Techniques for Selecting and Manipulating Subgraphs in Network Visualizations.
IEEE Trans. Vis. Comput. Graph., 2009

NAViGaTOR: Network Analysis, Visualization and Graphing Toronto.
Bioinform., 2009

The KBMS Project and Beyond.
Proceedings of the Conceptual Modeling: Foundations and Applications, 2009

2008
Detecting Protein-Protein Interaction Sentences Using a Mixture Model.
Proceedings of the Natural Language and Information Systems, 2008

2007
Comparison of Machine Learning and Pattern Discovery Algorithms for the Prediction of Human Single Nucleotide Polymorphisms.
Proceedings of the 2007 IEEE International Conference on Granular Computing, 2007

2006
Predicting Protein-Protein Interactions by Association Mining.
Inf. Syst. Frontiers, 2006

Introduction: Knowledge Discovery in High-Throughput Biological Domains.
Inf. Syst. Frontiers, 2006

Efficient estimation of graphlet frequency distributions in protein-protein interaction networks.
Bioinform., 2006

CasSim: a top-level-simulator for grid scheduling and applications.
Proceedings of the 2006 conference of the Centre for Advanced Studies on Collaborative Research, 2006

2005
Data Mining for Case-Based Reasoning in High-Dimensional Biological Domains.
IEEE Trans. Knowl. Data Eng., 2005

Online Predicted Human Interaction Database.
Bioinform., 2005

An Ensemble of Case-Based Classifiers for High-Dimensional Biological Domains.
Proceedings of the Case-Based Reasoning, 2005

Feature Selection for Improving Case-Based Classifiers on High-Dimensional Data Sets.
Proceedings of the Eighteenth International Florida Artificial Intelligence Research Society Conference, 2005

Scheduling functional regression tests for IBM DB2 products.
Proceedings of the 2005 conference of the Centre for Advanced Studies on Collaborative Research, 2005

2004
Ontologies for Knowledge Management: An Information Systems Perspective.
Knowl. Inf. Syst., 2004

Functional topology in a network of protein interactions.
Bioinform., 2004

Modeling interactome: scale-free or geometric?.
Bioinform., 2004

Protein complex prediction via cost-based clustering.
Bioinform., 2004

Applications of Case-Based Reasoning in Molecular Biology.
AI Mag., 2004

AI and Bioinformatics.
AI Mag., 2004

Maintaining Case-Based Reasoning Systems: A Machine Learning Approach.
Proceedings of the Advances in Case-Based Reasoning, 7th European Conference, 2004

2002
Binary tree-structured vector quantization approach to clustering and visualizing microarray data.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

2001
Intelligent decision support for protein crystal growth.
IBM Syst. J., 2001

Improving Objectivity and Scalability in Protein Crystallization: Integrating Image Analysis With Knowledge Discovery.
IEEE Intell. Syst., 2001

Image-Feature Extraction for Protein Crystallization: Integrating Image Analysis and Case-Based Reasoning.
Proceedings of the Thirteenth Innovative Applications of Artificial Intelligence Conference, 2001

2000
Incremental Iterative Retrieval and Browsing for Efficient Conversational CBR Systems.
Appl. Intell., 2000

Extending Case-Based Reasoning by Discovering and Using Image Features in IVF.
Proceedings of the Applied Computing 2000, 2000

1998
Case-based reasoning in IVF: prediction and knowledge mining.
Artif. Intell. Medicine, 1998

Reverse Engineering by Mining Dynamic Repositories.
Proceedings of the 5th Working Conference on Reverse Engineering, 1998

An Efficient Approach to Iterative Browsing and Retrieval for Case-Based Reasoning.
Proceedings of the Tasks and Methods in Applied Artificial Intelligence, 1998

Building Quality into Case-Based Reasoning Systems.
Proceedings of the Advanced Information Systems Engineering, 1998

1997
Improving Performance of Case-Based Classification Using Context-Based Relevance.
Int. J. Artif. Intell. Tools, 1997

Similarity-based retrieval for diverse bookshelf software repository users.
Proceedings of the 1997 conference of the Centre for Advanced Studies on Collaborative Research, 1997

1996
Case-Based Classification Using Similarity-Based Retrieval.
Proceedings of the Eigth International Conference on Tools with Artificial Intelligence, 1996

1992
A Statistical Approach to Solving the EBL Utility Problem.
Proceedings of the 10th National Conference on Artificial Intelligence, 1992


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