Simona Panni

According to our database, Simona Panni authored at least 16 papers between 2007 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study.

Simona Panni, Kalpana Panneerselvam, Pablo Porras, Margaret J. Duesbury, Livia Perfetto, Luana Licata, Henning Hermjakob, Sandra E. Orchard

Database J. Biol. Databases Curation, 2023

2022

The IntAct database: efficient access to fine-grained molecular interaction data.

Noemi del-Toro, Anjali Shrivastava, Eliot Ragueneau, Birgit Meldal, Colin W. Combe, Elisabet Barrera, Livia Perfetto, Karyn How, Prashansa Ratan, Gautam Shirodkar, Odilia Lu, Bálint Mészáros, Xavier Watkins, Sangya Pundir, Luana Licata, Marta Iannuccelli, Matteo Pellegrini, Maria Jesus Martin, Simona Panni, Margaret J. Duesbury, Sylvain D. Vallet, Juri Rappsilber, Sylvie Ricard-Blum, Gianni Cesareni, Lukasz Salwínski, Sandra E. Orchard, Pablo Porras, Kalpana Panneerselvam, Henning Hermjakob

Nucleic Acids Res., 2022

2021

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.

Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg

Nucleic Acids Res., 2021

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).

Vasundra Touré, Steven Vercruysse, Marcio Luis Acencio, Ruth C. Lovering, Sandra E. Orchard, Glyn Bradley, Cristina Casals-Casas, Claudine Chaouiya, Noemi del-Toro, Åsmund Flobak, Pascale Gaudet, Henning Hermjakob, Charles Tapley Hoyt, Luana Licata, Astrid Lægreid, Christopher J. Mungall, Anne Niknejad, Simona Panni, Livia Perfetto, Pablo Porras, Dexter Pratt, Julio Saez-Rodriguez, Denis Thieffry, Paul D. Thomas, Dénes Türei, Martin Kuiper

Bioinform., 2021

2020

The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions.

Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret J. Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, Kalpana Panneerselvam, Simona Panni, N. Rahimzadeh, Sylvie Ricard-Blum, Lukasz Salwínski, Anjali Shrivastava, Gianni Cesareni, Matteo Pellegrini, Sandra E. Orchard, Igor Jurisica, Henning Hermjakob, Pablo Porras

Database J. Biol. Databases Curation, 2020

2018

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.

M. Sivade Dumousseau, Diego Alonso-López, Mais G. Ammari, Glyn Bradley, Nancy H. Campbell, Arnaud Céol, Gianni Cesareni, Colin W. Combe, Javier De Las Rivas, Noemi del-Toro, Joshua Heimbach, Henning Hermjakob, Igor Jurisica, Maximilian Koch, Luana Licata, Ruth C. Lovering, David J. Lynn, Birgit H. M. Meldal, Gos Micklem, Simona Panni, Pablo Porras, Sylvie Ricard-Blum, Bernd Roechert, Lukasz Salwínski, Anjali Shrivastava, Julie M. Sullivan, Nicolas Thierry-Mieg, Yo Yehudi, Kim Van Roey, Sandra E. Orchard

BMC Bioinform., 2018

2015

Searching for repetitions in biological networks: methods, resources and tools.

Simona Panni, Simona E. Rombo

Briefings Bioinform., 2015

2011

Asymmetric Comparison and Querying of Biological Networks.

Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo

IEEE ACM Trans. Comput. Biol. Bioinform., 2011

2010

Asymmetric Global Alignment of Protein-Protein Interaction Graph Databases (Extended Abstract).

Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo

Proceedings of the Eighteenth Italian Symposium on Advanced Database Systems, 2010

"Master-Slave" Biological Network Alignment.

Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo

Proceedings of the Bioinformatics Research and Applications, 6th International Symposium, 2010

2009

VirusMINT: a viral protein interaction database.

Andrew Chatr-aryamontri, Arnaud Céol, Daniele Peluso, Aurelio Nardozza, Simona Panni, Francesca Sacco, Michele Tinti, Alex Smolyar, Luisa Castagnoli, Marc Vidal, Michael E. Cusick, Gianni Cesareni

Nucleic Acids Res., 2009

A technique to search for functional similarities in protein-protein interaction networks.

Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo

Int. J. Data Min. Bioinform., 2009

Extracting similar sub-graphs across PPI networks.

Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo

Proceedings of the 24th International Symposium on Computer and Information Sciences, 2009

2008

Singling out functional similarities in graph databases.

Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo

Proceedings of the Sixteenth Italian Symposium on Advanced Database Systems, 2008

Protein-Protein Interaction Network Querying by a "Focus and Zoom" Approach.

Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo

Proceedings of the Bioinformatics Research and Development, 2008

2007

GRAPPIN: Bipartite GRAph Based Protein-Protein Interaction Network Similarity Search.

Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007