Melissa S. Cline

According to our database, Melissa S. Cline authored at least 29 papers between 2002 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Modeling the impact of data sharing on variant classification.

James Casaletto, Melissa S. Cline, Brian H. Shirts

J. Am. Medical Informatics Assoc., February, 2023

2021

The GA4GH Variation Representation Specification (VRS): a Computational Framework for the Precise Representation of Molecular Variation.

Alex H. Wagner, Lawrence J. Babb, Melissa S. Cline, Helen Schuilenburg, Tristan Nelson, Robert R. Freimuth, Reece Hart

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2017

Data Sharing and Reproducible Clinical Genetic Testing: Successes and Challenges.

Shan Yang, Melissa S. Cline, Can Zhang, Benedict Paten, Stephen E. Lincoln

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

2015

The UCSC Cancer Genomics Browser: update 2015.

Mary Goldman, Brian Craft, Teresa Swatloski, Melissa S. Cline, Olena Morozova, Mark Diekhans, David Haussler, Jingchun Zhu

Nucleic Acids Res., 2015

2014

RBPmap: a web server for mapping binding sites of RNA-binding proteins.

Inbal Paz, Idit Kosti, Manuel Ares, Melissa S. Cline, Yael Mandel-Gutfreund

Nucleic Acids Res., 2014

The UCSC Genome Browser database: 2014 update.

Donna Karolchik, Galt P. Barber, Jonathan Casper, Hiram Clawson, Melissa S. Cline, Mark Diekhans, Timothy R. Dreszer, Pauline A. Fujita, Luvina Guruvadoo, Maximilian Haeussler, Rachel A. Harte, Steven G. Heitner, Angie S. Hinrichs, Katrina Learned, Brian T. Lee, Chin H. Li, Brian J. Raney, Brooke L. Rhead, Kate R. Rosenbloom, Cricket A. Sloan, Matthew L. Speir, Ann S. Zweig, David Haussler, Robert M. Kuhn, W. James Kent

Nucleic Acids Res., 2014

The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data.

Christopher Wilks, Melissa S. Cline, Erich Weiler, Mark Diekhans, Brian Craft, Christy Martin, Daniel Murphy, Howdy Pierce, John Black, Donavan Nelson, Brian Litzinger, Thomas Hatton, Lori Maltbie, Michael Ainsworth, Patrick Allen, Linda Rosewood, Elizabeth Mitchell, Bradley Smith, Jim Warner, John Groboske, Haifang Telc, Daniel Wilson, Brian Sanford, Hannes Schmidt, David Haussler, Daniel Maltbie

Database J. Biol. Databases Curation, 2014

2013

The UCSC Genome Browser database: extensions and updates 2013.

Laurence R. Meyer, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Robert M. Kuhn, Matthew C. Wong, Cricket A. Sloan, Kate R. Rosenbloom, Greg Roe, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Venkat S. Malladi, Chin H. Li, Brian T. Lee, Katrina Learned, Vanessa Kirkup, Fan Hsu, Steven G. Heitner, Rachel A. Harte, Maximilian Haeussler, Luvina Guruvadoo, Mary Goldman, Belinda Giardine, Pauline A. Fujita, Timothy R. Dreszer, Mark Diekhans, Melissa S. Cline, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent

Nucleic Acids Res., 2013

The UCSC Cancer Genomics Browser: update 2013.

Mary Goldman, Brian Craft, Teresa Swatloski, Kyle Ellrott, Melissa S. Cline, Mark Diekhans, Singer Ma, Chris Wilks, Joshua M. Stuart, David Haussler, Jingchun Zhu

Nucleic Acids Res., 2013

2012

ENCODE whole-genome data in the UCSC Genome Browser: update 2012.

Kate R. Rosenbloom, Timothy R. Dreszer, Jeffrey C. Long, Venkat S. Malladi, Cricket A. Sloan, Brian J. Raney, Melissa S. Cline, Donna Karolchik, Galt P. Barber, Hiram Clawson, Mark Diekhans, Pauline A. Fujita, Mary Goldman, Robert C. Gravell, Rachel A. Harte, Angie S. Hinrichs, Vanessa Kirkup, Robert M. Kuhn, Katrina Learned, Morgan Maddren, Laurence R. Meyer, Andy Pohl, Brooke L. Rhead, Matthew C. Wong, Ann S. Zweig, David Haussler, W. James Kent

Nucleic Acids Res., 2012

The UCSC Genome Browser database: extensions and updates 2011.

Timothy R. Dreszer, Donna Karolchik, Ann S. Zweig, Angie S. Hinrichs, Brian J. Raney, Robert M. Kuhn, Laurence R. Meyer, Matthew C. Wong, Cricket A. Sloan, Kate R. Rosenbloom, Greg Roe, Brooke L. Rhead, Andy Pohl, Venkat S. Malladi, Chin H. Li, Katrina Learned, Vanessa Kirkup, Fan Hsu, Rachel A. Harte, Luvina Guruvadoo, Mary Goldman, Belinda Giardine, Pauline A. Fujita, Mark Diekhans, Melissa S. Cline, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent

Nucleic Acids Res., 2012

2011

ENCODE whole-genome data in the UCSC genome browser (2011 update).

Brian J. Raney, Melissa S. Cline, Kate R. Rosenbloom, Timothy R. Dreszer, Katrina Learned, Galt P. Barber, Laurence R. Meyer, Cricket A. Sloan, Venkat S. Malladi, Krishna M. Roskin, Bernard B. Suh, Angie S. Hinrichs, Hiram Clawson, Ann S. Zweig, Vanessa Kirkup, Pauline A. Fujita, Brooke L. Rhead, Kayla E. Smith, Andy Pohl, Robert M. Kuhn, Donna Karolchik, David Haussler, W. James Kent

Nucleic Acids Res., 2011

The UCSC Genome Browser database: update 2011.

Pauline A. Fujita, Brooke L. Rhead, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Melissa S. Cline, Mary Goldman, Galt P. Barber, Hiram Clawson, António Coelho, Mark Diekhans, Timothy R. Dreszer, Belinda Giardine, Rachel A. Harte, Jennifer Hillman-Jackson, Fan Hsu, Vanessa Kirkup, Robert M. Kuhn, Katrina Learned, Chin H. Li, Laurence R. Meyer, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Kayla E. Smith, David Haussler, W. James Kent

Nucleic Acids Res., 2011

Using bioinformatics to predict the functional impact of SNVs.

Melissa S. Cline, Rachel Karchin

Bioinform., 2011

2009

Affy exon tissues: exon levels in normal tissues in human, mouse and rat.

Andrew A. Pohl, Charles W. Sugnet, Tyson Clark, Kayla E. Smith, Pauline A. Fujita, Melissa S. Cline

Bioinform., 2009

2008

Integrative Visual Analysis of the Effects of Alternative Splicing on Protein Domain Interaction Networks.

Dorothea Emig, Melissa S. Cline, Karsten Klein, Anne Kunert, Petra Mutzel, Thomas Lengauer, Mario Albrecht

J. Integr. Bioinform., 2008

Integrating expression data with domain interaction networks.

Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht

Bioinform., 2008

2007

GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring.

Olivier Garcia, Cosmin Saveanu, Melissa S. Cline, Micheline Fromont-Racine, Alain Jacquier, Benno Schwikowski, Tero Aittokallio

Bioinform., 2007

2006

Unusual Intron Conservation near Tissue-Regulated Exons Found by Splicing Microarrays.

Charles W. Sugnet, Karpagam Srinivasan, Tyson Clark, Georgeann O'Brien, Melissa S. Cline, Hui Wang, Alan Williams, David Kulp, John Blume, David Haussler, Manuel Ares

PLoS Comput. Biol., 2006

2005

ANOSVA: a statistical method for detecting splice variation from expression data.

Melissa S. Cline, John Blume, Simon Cawley, Tyson Clark, Jing-Shan Hu, Gang Lu, Nathan Salomonis, Hui Wang, Alan Williams

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004

The Effects of Alternative Splicing on Transmembrane Proteins in the Mouse Genome.

Melissa S. Cline, Ron Shigeta, Raymond Wheeler, Michael A. Siani-Rose, David Kulp, Ann E. Loraine

Proceedings of the Biocomputing 2004, 2004

2003

NetAffx: Affymetrix probesets and annotations.

Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Venu Valmeekam, Shaw Sun, David Kulp, Michael A. Siani-Rose

Nucleic Acids Res., 2003

Exploring Alternative Transcript Structure in the Humangenome Using Blocks and Interpro.

Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose

J. Bioinform. Comput. Biol., 2003

GPCR-GRAPA-LIB-a refined library of hidden Markov Models for annotating GPCRs.

Ron Shigeta, Melissa S. Cline, Guoying Liu, Michael A. Siani-Rose

Bioinform., 2003

Gene structure-based splice variant deconvolution using a microarry platform.

Hui Wang, Earl Hubbell, Jing-Shan Hu, Gangwu Mei, Melissa S. Cline, Gang Lu, Tyson Clark, Michael A. Siani-Rose, Manuel Ares, David Kulp, David Haussler

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

2002

Predicting reliable regions in protein sequence alignments.

Melissa S. Cline, Richard Hughey, Kevin Karplus

Bioinform., 2002

NetAffx: affymetrix probeset annotations.

Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Stephen A. Chervitz, David Kulp, Michael A. Siani-Rose

Proceedings of the 2002 ACM Symposium on Applied Computing (SAC), 2002

Structure-Based Comparison of Four Eukaryotic Genomes.

Melissa S. Cline, Guoying Liu, Ann E. Loraine, Ron Shigeta, Jill Cheng, Gangwu Mei, David Kulp, Michael A. Siani-Rose

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

Protein-Based Analysis of Alternative Splicing in the Human Genome.

Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose

Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002