Tero Aittokallio
Orcid: 0000-0002-0886-9769
According to our database1,
Tero Aittokallio
authored at least 61 papers
between 1999 and 2023.
Collaborative distances:
Collaborative distances:
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Bibliography
2023
Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data.
Nucleic Acids Res., July, 2023
OSCAR: Optimal subset cardinality regression using the L0-pseudonorm with applications to prognostic modelling of prostate cancer.
PLoS Comput. Biol., March, 2023
2022
Discovery of host-directed modulators of virus infection by probing the SARS-CoV-2-host protein-protein interaction network.
Briefings Bioinform., November, 2022
SynergyFinder 3.0: an interactive analysis and consensus interpretation of multi-drug synergies across multiple samples.
Nucleic Acids Res., 2022
Evaluation of statistical approaches for association testing in noisy drug screening data.
BMC Bioinform., 2022
2021
IEEE Trans. Vis. Comput. Graph., 2021
Network-guided identification of cancer-selective combinatorial therapies in ovarian cancer.
Briefings Bioinform., 2021
2020
PLoS Comput. Biol., 2020
SynToxProfiler: An interactive analysis of drug combination synergy, toxicity and efficacy.
PLoS Comput. Biol., 2020
Nucleic Acids Res., 2020
Cost-effective survival prediction for patients with advanced prostate cancer using clinical trial and real-world hospital registry datasets.
Int. J. Medical Informatics, 2020
Breeze: an integrated quality control and data analysis application for high-throughput drug screening.
Bioinform., 2020
SynergyFinder: a web application for analyzing drug combination dose-response matrix data.
Bioinform., 2020
Interactive visual analysis of drug-target interaction networks using Drug Target Profiler, with applications to precision medicine and drug repurposing.
Briefings Bioinform., 2020
2019
Nat. Mach. Intell., 2019
2018
ePCR: an R-package for survival and time-to-event prediction in advanced prostate cancer, applied to real-world patient cohorts.
Bioinform., 2018
Bioinform., 2018
Global proteomics profiling improves drug sensitivity prediction: results from a multi-omics, pan-cancer modeling approach.
Bioinform., 2018
Drug Target Commons 2.0: a community platform for systematic analysis of drug-target interaction profiles.
Database J. Biol. Databases Curation, 2018
2017
Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors.
PLoS Comput. Biol., 2017
C-SPADE: a web-tool for interactive analysis and visualization of drug screening experiments through compound-specific bioactivity dendrograms.
Nucleic Acids Res., 2017
MediSyn: uncertainty-aware visualization of multiple biomedical datasets to support drug treatment selection.
BMC Bioinform., 2017
Systematic identification of feature combinations for predicting drug response with Bayesian multi-view multi-task linear regression.
Bioinform., 2017
2016
Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization.
Bioinform., 2016
2015
Impact of normalization methods on high-throughput screening data with high hit rates and drug testing with dose-response data.
Bioinform., 2015
TIMMA-R: an R package for predicting synergistic multi-targeted drug combinations in cancer cell lines or patient-derived samples.
Bioinform., 2015
Briefings Bioinform., 2015
2014
Making Sense of Large-Scale Kinase Inhibitor Bioactivity Data Sets: A Comparative and Integrative Analysis.
J. Chem. Inf. Model., 2014
A Two-Step Learning Approach for Solving Full and Almost Full Cold Start Problems in Dyadic Prediction.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2014
2013
Target Inhibition Networks: Predicting Selective Combinations of Druggable Targets to Block Cancer Survival Pathways.
PLoS Comput. Biol., 2013
Genetic variants and their interactions in disease risk prediction - machine learning and network perspectives.
BioData Min., 2013
2012
Mining high-throughput screens for cancer drug targets - lessons from yeast chemical-genomic profiling and synthetic lethality.
WIREs Data Mining Knowl. Discov., 2012
A multilevel layout algorithm for visualizing physical and genetic interaction networks, with emphasis on their modular organization.
BioData Min., 2012
Wrapper-based selection of genetic features in genome-wide association studies through fast matrix operations.
Algorithms Mol. Biol., 2012
Proceedings of the Applied Parallel and Scientific Computing, 2012
2011
Probabilistic Analysis of Probe Reliability in Differential Gene Expression Studies with Short Oligonucleotide Arrays.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
Quantitative maps of genetic interactions in yeast - Comparative evaluation and integrative analysis.
BMC Syst. Biol., 2011
Fast and parallelized greedy forward selection of genetic variants in Genome-wide association studies.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011
2010
Dealing with missing values in large-scale studies: microarray data imputation and beyond.
Briefings Bioinform., 2010
2009
Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks.
Bioinform., 2009
Optimized detection of differential expression in global profiling experiments: case studies in clinical transcriptomic and quantitative proteomic datasets.
Briefings Bioinform., 2009
2008
IEEE ACM Trans. Comput. Biol. Bioinform., 2008
Missing value imputation improves clustering and interpretation of gene expression microarray data.
BMC Bioinform., 2008
Overnight features of transcutaneous carbon dioxide measurement as predictors of metabolic status.
Artif. Intell. Medicine, 2008
2007
Inspiratory flow shape clustering: An automated method to monitor upper airway performance during sleep.
Comput. Methods Programs Biomed., 2007
GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring.
Bioinform., 2007
Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process.
Bioinform., 2007
2006
Inference of Gene Coexpression Networks by Integrative Analysis across Microarray Experiments.
J. Integr. Bioinform., 2006
BMC Bioinform., 2006
Bioinform., 2006
Briefings Bioinform., 2006
2005
On the Robustness of Fluorescence Fingerprinting of Plants.
Proceedings of the IASTED International Conference on Artificial Intelligence and Applications, 2005
2003
Feature learning with a genetic algorithm for fluorescence fingerprinting of plant species.
Pattern Recognit. Lett., 2003
Computational Strategies for Analyzing Data in Gene Expression Microarray Experiments.
J. Bioinform. Comput. Biol., 2003
Bioinform., 2003
Proceedings of the Artificial Evolution, 2003
2000
Comput. Methods Programs Biomed., 2000
1999
Comput. Biomed. Res., 1999