Michael A. Charleston

According to our database1, Michael A. Charleston authored at least 25 papers between 1994 and 2019.

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Bibliography

2019
Molecular Phylogenetics.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

2016
Biological Network Edit Distance.
J. Comput. Biol., 2016

RASCAL: A Randomized Approach for Coevolutionary Analysis.
J. Comput. Biol., 2016

Towards sub-quadratic time and space complexity solutions for the dated tree reconciliation problem.
Algorithms Mol. Biol., 2016

Mining autograding data in computer science education.
Proceedings of the Australasian Computer Science Week Multiconference, 2016

2015
Evolving Nutritional Strategies in the Presence of Competition: A Geometric Agent-Based Model.
PLoS Comput. Biol., 2015

Node Handprinting: A Scalable and Accurate Algorithm for Aligning Multiple Biological Networks.
J. Comput. Biol., 2015

A time and space complexity reduction for coevolutionary analysis of trees generated under both a Yule and Uniform model.
Comput. Biol. Chem., 2015

Simple, rapid and accurate genotyping-by-sequencing from aligned whole genomes with ArrayMaker.
Bioinform., 2015

A Sub-quadratic Time and Space Complexity Solution for the Dated Tree Reconciliation Problem for Select Tree Topologies.
Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015

2014
Node Fingerprinting: An Efficient Heuristic for Aligning Biological Networks.
J. Comput. Biol., 2014

Introducing TreeCollapse: a novel greedy algorithm to solve the cophylogeny reconstruction problem.
BMC Bioinform., 2014

2013
Active Subnetwork Recovery with a Mechanism-Dependent Scoring Function; with application to Angiogenesis and Organogenesis studies.
BMC Bioinform., 2013

2011
Verification of phylogenetic Inference Programs Using Metamorphic Testing.
J. Bioinform. Comput. Biol., 2011

2009
On the Computational Complexity of the Reticulate Cophylogeny Reconstruction Problem.
J. Comput. Biol., 2009

2008
Phylogenetic estimation with partial likelihood tensors
CoRR, 2008

Differential variability analysis of gene expression and its application to human diseases.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007
A Novel Algorithm for Adaptive and Neutral Evolutionary Patterns Associated with HIV Drug Resistance.
Proceedings of the 2007 IEEE/ACS International Conference on Computer Systems and Applications (AICCSA 2007), 2007

2006
Traversing the tangle: Algorithms and applications for cophylogenetic studies.
J. Biomed. Informatics, 2006

A cophylogenetic perspective on host-pathogen evolution.
Proceedings of the Disease Evolution: Models, 2006

2001
Hitch-Hiking: A Parallel Heuristic Search Strategy, Applied to the Phylogeny Problem.
J. Comput. Biol., 2001

1998
Spectrum: spectral analysis of phylogenetic data.
Bioinform., 1998

1996
Reconciled trees and incongruent gene and species trees.
Proceedings of the Mathematical Hierarchies and Biology, 1996

1995
Toward a Characterization of Landscapes of Combinatorial Optimization Problems, with Special Attention to the Phylogeny Problem.
J. Comput. Biol., 1995

1994
The Effects of Sequence Length, Tree Topology, and Number of Taxa on the Performance of Phylogenetic Methods.
J. Comput. Biol., 1994


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