Joshua W. K. Ho

According to our database1, Joshua W. K. Ho authored at least 30 papers between 2005 and 2022.

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PhD thesis 


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Evaluation of Experimental Protocols for Shotgun Whole-Genome Metagenomic Discovery of Antibiotic Resistance Genes.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

FlowGrid enables fast clustering of very large single-cell RNA-seq data.
Bioinform., 2021

Introduction to the Special Issue on GIW/ABACBS 2019.
J. Bioinform. Comput. Biol., 2020

PARC: ultrafast and accurate clustering of phenotypic data of millions of single cells.
Bioinform., 2020

dv-trio: a family-based variant calling pipeline using DeepVariant.
Bioinform., 2020

Expression Clustering.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Discovery of perturbation gene targets via free text metadata mining in Gene Expression Omnibus.
Comput. Biol. Chem., 2019

Ultrafast clustering of single-cell flow cytometry data using FlowGrid.
BMC Syst. Biol., 2019

iSyTE 2.0: a database for expression-based gene discovery in the eye.
Nucleic Acids Res., 2018

C3: An R package for cross-species compendium-based cell-type identification.
Comput. Biol. Chem., 2018

Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud.
Bioinform., 2017

Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells.
Bioinform., 2017

Harnessing Multiple Source Test Cases in Metamorphic Testing: A Case Study in Bioinformatics.
Proceedings of the 2nd IEEE/ACM International Workshop on Metamorphic Testing, 2017

XGSA: A statistical method for cross-species gene set analysis.
Bioinform., 2016

A cloud-based framework for applying metamorphic testing to a bioinformatics pipeline.
Proceedings of the 1st International Workshop on Metamorphic Testing, 2016

hiHMM: Bayesian non-parametric joint inference of chromatin state maps.
Bioinform., 2015

Comparative analysis of metazoan chromatin organization Open.
Nat., 2014

Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie.
BMC Bioinform., 2014

Testing and validating machine learning classifiers by metamorphic testing.
J. Syst. Softw., 2011

Verification of phylogenetic Inference Programs Using Metamorphic Testing.
J. Bioinform. Comput. Biol., 2011

Gene-gene interaction filtering with ensemble of filters.
BMC Bioinform., 2011

A genetic ensemble approach for gene-gene interaction identification.
BMC Bioinform., 2010

A voting approach to identify a small number of highly predictive genes using multiple classifiers.
BMC Bioinform., 2009

An innovative approach for testing bioinformatics programs using metamorphic testing.
BMC Bioinform., 2009

Application of Metamorphic Testing to Supervised Classifiers.
Proceedings of the Ninth International Conference on Quality Software, 2009

Differential variability analysis of gene expression and its application to human diseases.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

SeqVis: Visualization of compositional heterogeneity in large alignments of nucleotides.
Bioinform., 2006

PathBank: Web-Based Querying and Visualziation of an Integrated Biological Pathway Database.
Proceedings of the Third International Conference on Computer Graphics, 2006

Drawing Clustered Graphs in Three Dimensions.
Proceedings of the Graph Drawing, 13th International Symposium, 2005

GEOMI: GEOmetry for Maximum Insight.
Proceedings of the Graph Drawing, 13th International Symposium, 2005