Joshua W. K. Ho

According to our database, Joshua W. K. Ho authored at least 33 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

An edge-device-compatible algorithm for valvular heart diseases screening using phonocardiogram signals with a lightweight convolutional neural network and self-supervised learning.

Shichao Ma, Junyi Chen, Joshua W. K. Ho

Comput. Methods Programs Biomed., January, 2024

scDecouple: decoupling cellular response from infected proportion bias in scCRISPR-seq.

Qiuchen Meng, Lei Wei, Kun Ma, Ming Shi, Xinyi Lin, Joshua W. K. Ho, Yinqing Li, Xuegong Zhang

Briefings Bioinform., January, 2024

2023

Translation Rate Prediction and Regulatory Motif Discovery with Multi-task Learning.

Weizhong Zheng, John H. C. Fong, Yuk Kei Wan, Athena H. Y. Chu, Yuanhua Huang, Alan S. L. Wong, Joshua W. K. Ho

Proceedings of the Research in Computational Molecular Biology, 2023

2022

Evaluation of Experimental Protocols for Shotgun Whole-Genome Metagenomic Discovery of Antibiotic Resistance Genes.

Ken Hung-On Yu, Xiunan Fang, Haobin Yao, Bond Ng, Tak Kwan Leung, Ling-Ling Wang, Chi Ho Lin, Agnes Sze Wah Chan, Wai Keung Leung, Suet Yi Leung, Joshua Wing Kei Ho

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

2021

FlowGrid enables fast clustering of very large single-cell RNA-seq data.

Xiunan Fang, Joshua W. K. Ho

Bioinform., 2021

2020

Introduction to the Special Issue on GIW/ABACBS 2019.

Joshua W. K. Ho

J. Bioinform. Comput. Biol., 2020

PARC: ultrafast and accurate clustering of phenotypic data of millions of single cells.

Shobana V. Stassen, Dickson M. D. Siu, Kelvin C. M. Lee, Joshua W. K. Ho, Hayden K. H. So, Kevin K. Tsia

Bioinform., 2020

dv-trio: a family-based variant calling pipeline using DeepVariant.

Eddie Ip, Clinton Hadinata, Joshua Wing Kei Ho, Eleni Giannoulatou

Bioinform., 2020

2019

Expression Clustering.

Xiaoxin Ye, Joshua W. K. Ho

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Discovery of perturbation gene targets via free text metadata mining in Gene Expression Omnibus.

Djordje Djordjevic, Joshua Y. S. Tang, Yun Xin Chen, Shu Lun Shannon Kwan, Raymond W. K. Ling, Gordon Qian, Chelsea Y. Y. Woo, Samuel J. Ellis, Joshua Wing Kei Ho

Comput. Biol. Chem., 2019

Ultrafast clustering of single-cell flow cytometry data using FlowGrid.

Xiaoxin Ye, Joshua Wing Kei Ho

BMC Syst. Biol., 2019

2018

iSyTE 2.0: a database for expression-based gene discovery in the eye.

Atul Kakrana, Andrian Yang, Deepti Anand, Djordje Djordjevic, S. Deepthi Ramachandruni, Abhyudai Singh, Hongzhan Huang, Joshua Wing Kei Ho, Salil A. Lachke

Nucleic Acids Res., 2018

C3: An R package for cross-species compendium-based cell-type identification.

Md Humayun Kabir, Djordje Djordjevic, Michael D. O'Connor, Joshua Wing Kei Ho

Comput. Biol. Chem., 2018

2017

Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud.

Andrian Yang, Michael Troup, Peijie Lin, Joshua Wing Kei Ho

Bioinform., 2017

Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells.

Pengyi Yang, Andrew J. Oldfield, Taiyun Kim, Andrian Yang, Jean Yee Hwa Yang, Joshua Wing Kei Ho

Bioinform., 2017

Harnessing Multiple Source Test Cases in Metamorphic Testing: A Case Study in Bioinformatics.

Joshua Y. S. Tang, Andrian Yang, Tsong Yueh Chen, Joshua Wing Kei Ho

Proceedings of the 2nd IEEE/ACM International Workshop on Metamorphic Testing, 2017

2016

XGSA: A statistical method for cross-species gene set analysis.

Djordje Djordjevic, Kenro Kusumi, Joshua Wing Kei Ho

Bioinform., 2016

A cloud-based framework for applying metamorphic testing to a bioinformatics pipeline.

Michael Troup, Andrian Yang, Amir Hossein Kamali, Eleni Giannoulatou, Tsong Yueh Chen, Joshua Wing Kei Ho

Proceedings of the 1st International Workshop on Metamorphic Testing, 2016

2015

hiHMM: Bayesian non-parametric joint inference of chromatin state maps.

Kyung-Ah Sohn, Joshua Wing Kei Ho, Djordje Djordjevic, Hyun-hwan Jeong, Peter J. Park, Ju Han Kim

Bioinform., 2015

2014

Comparative analysis of metazoan chromatin organization Open.

Joshua Wing Kei Ho, Youngsook L. Jung, Tao Liu, Burak Han Alver, Soohyun Lee, Kohta Ikegami, Kyung-Ah Sohn, Aki Minoda, Michael Y. Tolstorukov, Alex Appert, Stephen C. J. Parker, Tingting Gu, Anshul Kundaje, Nicole C. Riddle, Eric Bishop, Thea A. Egelhofer, Sheng'en Shawn Hu, Artyom A. Alekseyenko, Andreas Rechtsteiner, Dalal Asker, Jason A. Belsky, Sarah K. Bowman, Q. Brent Chen, Ron A.-J. Chen, Daniel S. Day, Yan Dong, Andrea C. Dose, Xikun Duan, Charles B. Epstein, Sevinc Ercan, Elise A. Feingold, Francesco Ferrari, Jacob M. Garrigues, Nils Gehlenborg, Peter J. Good, Psalm Haseley, Daniel He, Moritz Herrmann, Michael M. Hoffman, Tess E. Jeffers, Peter V. Kharchenko, Paulina Kolasinska-Zwierz, Chitra V. Kotwaliwale, Nischay Kumar, Sasha A. Langley, Erica Larschan, Isabel Latorre, Maxwell W. Libbrecht, Xueqiu Lin, Richard Park, Michael J. Pazin, Hoang N. Pham, Annette Plachetka, Bo Qin, Yuri B. Schwartz, Noam Shoresh, Przemyslaw Stempor, Anne Vielle, Chengyang Wang, Christina M. Whittle, Huiling Xue, Robert E. Kingston, Ju Han Kim, Bradley E. Bernstein, Abby F. Dernburg, Vincenzo Pirrotta, Mitzi I. Kuroda, William S. Noble, Thomas D. Tullius, Manolis Kellis, David M. MacAlpine, Susan Strome, Sarah C. R. Elgin, Xiaole Shirley Liu, Jason D. Lieb, Julie Ahringer, Gary H. Karpen, Peter J. Park

Nat., 2014

Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie.

Eleni Giannoulatou, Shin-Ho Park, David T. Humphreys, Joshua Wing Kei Ho

BMC Bioinform., 2014

2011

Testing and validating machine learning classifiers by metamorphic testing.

Xiaoyuan Xie, Joshua Wing Kei Ho, Christian Murphy, Gail E. Kaiser, Baowen Xu, Tsong Yueh Chen

J. Syst. Softw., 2011

Verification of phylogenetic Inference Programs Using Metamorphic Testing.

Md. Shaik Sadi, Fei-Ching Kuo, Joshua Wing Kei Ho, Michael A. Charleston, Tsong Yueh Chen

J. Bioinform. Comput. Biol., 2011

Gene-gene interaction filtering with ensemble of filters.

Pengyi Yang, Joshua Wing Kei Ho, Jean Yee Hwa Yang, Bing Bing Zhou

BMC Bioinform., 2011

2010

A genetic ensemble approach for gene-gene interaction identification.

Pengyi Yang, Joshua Wing Kei Ho, Albert Y. Zomaya, Bing Bing Zhou

BMC Bioinform., 2010

2009

A voting approach to identify a small number of highly predictive genes using multiple classifiers.

Md. Rafiul Hassan, M. Maruf Hossain, James Bailey, Geoff MacIntyre, Joshua Wing Kei Ho, Kotagiri Ramamohanarao

BMC Bioinform., 2009

An innovative approach for testing bioinformatics programs using metamorphic testing.

Tsong Yueh Chen, Joshua Wing Kei Ho, Huai Liu, Xiaoyuan Xie

BMC Bioinform., 2009

Application of Metamorphic Testing to Supervised Classifiers.

Xiaoyuan Xie, Joshua Wing Kei Ho, Christian Murphy, Gail E. Kaiser, Baowen Xu, Tsong Yueh Chen

Proceedings of the Ninth International Conference on Quality Software, 2009

2008

Differential variability analysis of gene expression and its application to human diseases.

Joshua Wing Kei Ho, Maurizio Stefani, Cristobal G. dos Remedios, Michael A. Charleston

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2006

SeqVis: Visualization of compositional heterogeneity in large alignments of nucleotides.

Joshua Wing Kei Ho, Cameron E. Adams, Jie Bin Lew, Timothy J. Matthews, Chiu Chin Ng, Arash Shahabi-Sirjani, Leng Hong Tan, Yu Zhao, Simon Easteal, Susan R. Wilson, Lars S. Jermiin

Bioinform., 2006

PathBank: Web-Based Querying and Visualziation of an Integrated Biological Pathway Database.

Joshua Wing Kei Ho, Tristan Manwaring, Seok-Hee Hong, Uwe Röhm, David Cho Yau Fung, Kai Xu, Tim Kraska, David Hart

Proceedings of the Third International Conference on Computer Graphics, 2006

2005

Drawing Clustered Graphs in Three Dimensions.

Joshua Wing Kei Ho, Seok-Hee Hong

Proceedings of the Graph Drawing, 13th International Symposium, 2005

GEOMI: GEOmetry for Maximum Insight.

Adel Ahmed, Tim Dwyer, Michael Forster, Xiaoyan Fu, Joshua Wing Kei Ho, Seok-Hee Hong, Dirk Koschützki, Colin Murray, Nikola S. Nikolov, Ronnie Taib, Alexandre Tarassov, Kai Xu

Proceedings of the Graph Drawing, 13th International Symposium, 2005