Katsuhisa Horimoto
According to our database1,
Katsuhisa Horimoto
authored at least 43 papers
between 1994 and 2022.
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Bibliography
2022
Phosprof: pathway analysis database of drug response based on phosphorylation activity measurements.
Database J. Biol. Databases Curation, 2022
2019
ToGo-WF: prediction of RNA tertiary structures and RNA-RNA/protein interactions using the KNIME workflow.
J. Comput. Aided Mol. Des., 2019
2013
Identification of master regulator candidates in conjunction with network screening and inference.
Int. J. Data Min. Bioinform., 2013
Identification of upstream regulators for prognostic expression signature genes in colorectal cancer.
BMC Syst. Biol., 2013
2012
A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats.
BMC Syst. Biol., 2012
Network clustering along diabetes progression in three tissues of Goto-Kakizaki rats.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
Exploration of Cellular Relationships from Characteristically Expressed Genes by Partial Canonical Correlation Analysis.
Proceedings of the Sixth International Conference on Complex, 2012
2011
NII Shonan Meet. Rep., 2011
Discovery of Chemical Compound Groups with Common Structures by a Network Analysis Approach (Affinity Prediction Method).
J. Chem. Inf. Model., 2011
Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression.
BMC Syst. Biol., 2011
Possible linkages between the inner and outer cellular states of human induced pluripotent stem cells.
BMC Syst. Biol., 2011
2010
Parameter optimization by using differential elimination: a general approach for introducing constraints into objective functions.
BMC Syst. Biol., 2010
Improvement of estimation accuracy in parameter optimization by symbolic computation.
Proceedings of the 2010 IEEE International Symposium on Computer-Aided Control System Design, 2010
A procedure for identifying master regulators in conjunction with network screening and inference.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010
A General Procedure for Accurate Parameter Estimation in Dynamic Systems Using New Estimation Errors.
Proceedings of the Algebraic and Numeric Biology - 4th International Conference, 2010
2009
Co-Expressed Gene Assessment Based on the Path Consistency Algorithm: Operon Detention in Escherichia coli.
Proceedings of the IEEE International Conference on Systems, 2009
Detection of network structure changes by graphical chain modeling: a case study of hepatitis C virus-related hepatocellular carcinoma.
Proceedings of the 48th IEEE Conference on Decision and Control, 2009
Proceedings of the Algorithmic Learning Theory, 20th International Conference, 2009
2008
Math. Comput. Sci., 2008
Judgment Algorithm for Periodicity of Time Series Data Based on Bayesian Information Criterion.
J. Bioinform. Comput. Biol., 2008
Integer programming-based approach to allocation of reporter genes for cell array analysis.
Int. J. Bioinform. Res. Appl., 2008
Network evaluation from the consistency of the graph structure with the measured data.
BMC Syst. Biol., 2008
2007
Gene Systems Network Inferred from Expression Profiles in Hepatocellular Carcinogenesis by Graphical Gaussian Model.
EURASIP J. Bioinform. Syst. Biol., 2007
Derivation of rigorous conditions for high cell-type diversity by algebraic approach.
Biosyst., 2007
Proceedings of the Computer Algebra in Scientific Computing, 10th International Workshop, 2007
Exact Parameter Determination for Parkinson's Disease Diagnosis with PET Using an Algebraic Approach.
Proceedings of the Algebraic Biology, Second International Conference, 2007
Proceedings of the Algebraic Biology, Second International Conference, 2007
2006
Protein Threading with Profiles and Distance Constraints Using Clique Based Algorithms.
J. Bioinform. Comput. Biol., 2006
Symbolic-numeric Estimation of Parameters in Biochemical Models by Quantifier Elimination.
J. Bioinform. Comput. Biol., 2006
Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints.
IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2006
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions.
Bioinform., 2006
2005
ASIAN: a web server for inferring a regulatory network framework from gene expression profiles.
Nucleic Acids Res., 2005
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005
2004
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004
2003
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling.
Signal Process., 2003
2002
Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling.
Bioinform., 2002
2001
Bioinform., 2001
Comprehensive comparison between locations of orthologous genes on archaeal and bacterial genomes.
Bioinform., 2001
1998
A method for comparing circular genomes from gene locations: application to mitochondrial genomes.
Bioinform., 1998
1994
Protein Superfamily Database (Prosup).
Proceedings of the Information Revolution: Impact on Science and Technology. Papers from CODATA Conf. 1994, 1994