Nuno Bandeira

According to our database, Nuno Bandeira authored at least 20 papers between 1983 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

The ProteomeXchange consortium at 10 years: 2023 update.

Eric W. Deutsch, Nuno Bandeira, Yasset Pérez-Riverol, Vagisha Sharma, Jeremy Carver, Luis Mendoza, Deepti Jaiswal Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno

Nucleic Acids Res., January, 2023

2022

P-Massive: A Real-Time Search Engine for a Multi-Terabyte Mass Spectrometry Database.

Narangerelt Batsoyol, Benjamin S. Pullman, Mingxun Wang, Nuno Bandeira, Steven Swanson

Proceedings of the SC22: International Conference for High Performance Computing, 2022

2021

Index-based, High-dimensional, Cosine Threshold Querying with Optimality Guarantees.

Yuliang Li, Jianguo Wang, Benjamin S. Pullman, Nuno Bandeira, Yannis Papakonstantinou

Theory Comput. Syst., 2021

2020

The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.

Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos, Andrew F. Jarnuczak, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno

Nucleic Acids Res., 2020

2019

Computational Proteomics (Dagstuhl Seminar 19351).

Nuno Bandeira, Lennart Martens

Dagstuhl Reports, 2019

2017

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition.

Eric W. Deutsch, Attila Csordas, Zhi Sun, Andrew F. Jarnuczak, Yasset Pérez-Riverol, Tobias Ternent, David S. Campbell, Manuel Bernal Llinares, Shujiro Okuda, Shin Kawano, Robert L. Moritz, Jeremy Carver, Mingxun Wang, Yasushi Ishihama, Nuno Bandeira, Henning Hermjakob, Juan Antonio Vizcaíno

Nucleic Acids Res., 2017

Revealing deep proteome diversity with community-scale proteomics big data.

Nuno Bandeira

Proceedings of the 8th International Conference on Computational Systems-Biology and Bioinformatics, 2017

2016

On the Privacy Risks of Sharing Clinical Proteomics Data.

Sujun Li, Nuno Bandeira, XiaoFeng Wang, Haixu Tang

Proceedings of the Summit on Clinical Research Informatics, 2016

2015

The Generating Function Approach for Peptide Identification in Spectral Networks.

Adrian Guthals, Christina Boucher, Nuno Bandeira

J. Comput. Biol., 2015

2013

Spectral Library Generating Function for Assessing Spectrum-Spectrum Match Significance.

Mingxun Wang, Nuno Bandeira

Proceedings of the Research in Computational Molecular Biology, 2013

2012

Accurate Mass Spectrometry Based Protein Quantification via Shared Peptides.

Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna

J. Comput. Biol., 2012

False discovery rates in spectral identification.

Kyowon Jeong, Sangtae Kim, Nuno Bandeira

BMC Bioinform., 2012

2011

NeuroPedia: neuropeptide database and spectral library.

Yoona Kim, Steven Bark, Vivian Hook, Nuno Bandeira

Bioinform., 2011

2010

Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra.

Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner

Proceedings of the Research in Computational Molecular Biology, 2010

2009

Shared Peptides in Mass Spectrometry Based Protein Quantification.

Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna

Proceedings of the Research in Computational Molecular Biology, 2009

2008

De Novo Sequencing of Nonribosomal Peptides.

Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter C. Dorrestein, Pavel A. Pevzner

Proceedings of the Research in Computational Molecular Biology, 2008

Multi-spectra peptide sequencing and its applications to multistage mass spectrometry.

Nuno Bandeira, Jesper V. Olsen, Matthias Mann, Pavel A. Pevzner

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007

Protein identification by spectral networks analysis.

Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner

Proc. Natl. Acad. Sci. USA, 2007

2006

A New Approach to Protein Identification.

Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner

Proceedings of the Research in Computational Molecular Biology, 2006

1983

A Two's Complement Array Multiplier Using True Values of the Operands.

Nuno Bandeira, Ken Vaccaro, James A. Howard

IEEE Trans. Computers, 1983