Yunping Zhu

This page is a disambiguation page, it actually contains mutiple papers from persons of the same or a similar name.

Bibliography

2024
Fetal Cardiac Structure Detection Using Multi-task Learning.
Proceedings of the Advanced Intelligent Computing in Bioinformatics, 2024

2023
COMMO: a web server for the identification and analysis of consensus gene modules across multiple methods.
Bioinform., December, 2023

The ProteomeXchange consortium at 10 years: 2023 update.
Nucleic Acids Res., January, 2023

2022
iProX in 2021: connecting proteomics data sharing with big data.
Nucleic Acids Res., 2022

2020
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.
Nucleic Acids Res., 2020

2019
iProX: an integrated proteome resource.
Nucleic Acids Res., 2019

KeggExp: a web server for visual integration of KEGG pathways and expression profile data.
Bioinform., 2019

SW-Tandem: a highly efficient tool for large-scale peptide identification with parallel spectrum dot product on Sunway TaihuLight.
Bioinform., 2019

PANDA: A comprehensive and flexible tool for quantitative proteomics data analysis.
Bioinform., 2019

A Complete CPU-FPGA Architecture for Protein Identification with Tandem Mass Spectrometry.
Proceedings of the International Conference on Field-Programmable Technology, 2019

2018
PANDA-view: an easy-to-use tool for statistical analysis and visualization of quantitative proteomics data.
Bioinform., 2018

2017
Using the entrapment sequence method as a standard to evaluate key steps of proteomics data analysis process.
BMC Genom., 2017

LiverWiki: a wiki-based database for human liver.
BMC Bioinform., 2017

MRUniNovo: an efficient tool for de novo peptide sequencing utilizing the hadoop distributed computing framework.
Bioinform., 2017

2015
Kinematic Analysis of a Partially Decoupled 3-DOF Parallel Wrist.
J. Robotics, 2015

Web Resources for Mass Spectrometry-based Proteomics.
Genom. Proteom. Bioinform., 2015

2014
SILVER: an efficient tool for stable isotope labeling LC-MS data quantitative analysis with quality control methods.
Bioinform., 2014

2013
Reconstruction of Signaling Network from Protein Interactions Based on Function Annotations.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

2012
Improving X!Tandem on Peptide Identification from Mass Spectrometry by Self-Boosted Percolator.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Using NMFAS to identify key biological pathways associated with human diseases.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

2011
Modular analysis of the probabilistic genetic interaction network.
Bioinform., 2011

2010
Computational identification of rare codons of <i>Escherichia coli </i>based on codon pairs preference.
BMC Bioinform., 2010

A novel parametric approach to mine gene regulatory relationship from microarray datasets.
BMC Bioinform., 2010

2009
A New Recursive Approach for Reconstructing Metabolic Networks from KEGG.
Proceedings of the Fourth International Conference on Frontier of Computer Science and Technology, 2009

A Semiautomatic Method to Achieve Independent and Intact Gene Ontology Slim (InitGO) and its Cytoscape Plugin Implementation.
Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

2008
A nonparametric model for quality control of database search results in shotgun proteomics.
BMC Bioinform., 2008

2006
Tumor classification based on independent component analysis.
Int. J. Pattern Recognit. Artif. Intell., 2006

A new technique for selecting features from protein sequences.
Int. J. Pattern Recognit. Artif. Intell., 2006

<i>SigFlux</i>: A novel network feature to evaluate the importance of proteins in signal transduction networks.
BMC Bioinform., 2006

2005
Improving protein secondary structure prediction by using the residue conformational classes.
Pattern Recognit. Lett., 2005

1999
CT reconstruction by using the MLS-ART technique and the KCD imaging system.
IEEE Trans. Medical Imaging, 1999


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