Yunping Zhu

This page is a disambiguation page, it actually contains mutiple papers from persons of the same or a similar name.

Bibliography

2023

COMMO: a web server for the identification and analysis of consensus gene modules across multiple methods.

[BibT_eX]

[DOI]

Bioinform., December, 2023

The ProteomeXchange consortium at 10 years: 2023 update.

[BibT_eX]

[DOI]

Nucleic Acids Res., January, 2023

2022

iProX in 2021: connecting proteomics data sharing with big data.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2022

2020

The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2020

2019

iProX: an integrated proteome resource.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2019

KeggExp: a web server for visual integration of KEGG pathways and expression profile data.

[BibT_eX]

[DOI]

Bioinform., 2019

SW-Tandem: a highly efficient tool for large-scale peptide identification with parallel spectrum dot product on Sunway TaihuLight.

[BibT_eX]

[DOI]

Bioinform., 2019

PANDA: A comprehensive and flexible tool for quantitative proteomics data analysis.

[BibT_eX]

[DOI]

Bioinform., 2019

A Complete CPU-FPGA Architecture for Protein Identification with Tandem Mass Spectrometry.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Field-Programmable Technology, 2019

2018

PANDA-view: an easy-to-use tool for statistical analysis and visualization of quantitative proteomics data.

[BibT_eX]

[DOI]

Bioinform., 2018

2017

Using the entrapment sequence method as a standard to evaluate key steps of proteomics data analysis process.

[BibT_eX]

[DOI]

BMC Genom., 2017

LiverWiki: a wiki-based database for human liver.

[BibT_eX]

[DOI]

BMC Bioinform., 2017

MRUniNovo: an efficient tool for de novo peptide sequencing utilizing the hadoop distributed computing framework.

[BibT_eX]

[DOI]

Bioinform., 2017

2015

Kinematic Analysis of a Partially Decoupled 3-DOF Parallel Wrist.

[BibT_eX]

[DOI]

J. Robotics, 2015

Web Resources for Mass Spectrometry-based Proteomics.

[BibT_eX]

[DOI]

Genom. Proteom. Bioinform., 2015

2014

SILVER: an efficient tool for stable isotope labeling LC-MS data quantitative analysis with quality control methods.

[BibT_eX]

[DOI]

Bioinform., 2014

2013

Reconstruction of Signaling Network from Protein Interactions Based on Function Annotations.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

2012

Improving X!Tandem on Peptide Identification from Mass Spectrometry by Self-Boosted Percolator.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Using NMFAS to identify key biological pathways associated with human diseases.

[BibT_eX]

[DOI]

Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

2011

Modular analysis of the probabilistic genetic interaction network.

[BibT_eX]

[DOI]

Bioinform., 2011

2010

Computational identification of rare codons of <i>Escherichia coli </i>based on codon pairs preference.

[BibT_eX]

[DOI]

BMC Bioinform., 2010

A novel parametric approach to mine gene regulatory relationship from microarray datasets.

[BibT_eX]

[DOI]

BMC Bioinform., 2010

2009

A New Recursive Approach for Reconstructing Metabolic Networks from KEGG.

[BibT_eX]

[DOI]

Proceedings of the Fourth International Conference on Frontier of Computer Science and Technology, 2009

A Semiautomatic Method to Achieve Independent and Intact Gene Ontology Slim (InitGO) and its Cytoscape Plugin Implementation.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

2008

A nonparametric model for quality control of database search results in shotgun proteomics.

[BibT_eX]

[DOI]

BMC Bioinform., 2008

2006

Tumor classification based on independent component analysis.

[BibT_eX]

[DOI]

Int. J. Pattern Recognit. Artif. Intell., 2006

A new technique for selecting features from protein sequences.

[BibT_eX]

[DOI]

Int. J. Pattern Recognit. Artif. Intell., 2006

<i>SigFlux</i>: A novel network feature to evaluate the importance of proteins in signal transduction networks.

[BibT_eX]

[DOI]

BMC Bioinform., 2006

2005

Improving protein secondary structure prediction by using the residue conformational classes.

[BibT_eX]

[DOI]

Pattern Recognit. Lett., 2005

1999

CT reconstruction by using the MLS-ART technique and the KCD imaging system.

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 1999

Yunping Zhu

Bibliography

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