Lennart Martens

  • Ghent University, Department of Biomolecular Medicine, Ghent, Belgium

According to our database1, Lennart Martens authored at least 40 papers between 2005 and 2023.

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In proceedings 
PhD thesis 


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On csauthors.net:


Updated MS²PIP web server supports cutting-edge proteomics applications.
Nucleic Acids Res., July, 2023

PDBe-KB: collaboratively defining the biological context of structural data.
Nucleic Acids Res., 2022

Unipept Visualizations: an interactive visualization library for biological data.
Bioinform., 2022

Computational Proteomics (Dagstuhl Seminar 21271).
Dagstuhl Reports, 2021

Unipept CLI 2.0: adding support for visualizations and functional annotations.
Bioinform., 2020

LNCipedia 5: towards a reference set of human long non-coding RNAs.
Nucleic Acids Res., 2019

Updated MS²PIP web server delivers fast and accurate MS² peak intensity prediction for multiple fragmentation methods, instruments and labeling techniques.
Nucleic Acids Res., 2019

Computational Proteomics (Dagstuhl Seminar 19351).
Dagstuhl Reports, 2019

Accurate peptide fragmentation predictions allow data driven approaches to replace and improve upon proteomics search engine scoring functions.
Bioinform., 2019

DoRes within CellMissy: dose-response analysis on cell migration and related data.
Bioinform., 2019

The online Tabloid Proteome: an annotated database of protein associations.
Nucleic Acids Res., 2018

Computational Proteomics (Dagstuhl Seminar 17421).
Dagstuhl Reports, 2017

sfinx: an R package for the elimination of false positives from affinity purification-mass spectrometry datasets.
Bioinform., 2017

MAPPI-DAT: data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform.
Bioinform., 2017

sORFs.org: a repository of small ORFs identified by ribosome profiling.
Nucleic Acids Res., 2016

An update on LNCipedia: a database for annotated human lncRNA sequences.
Nucleic Acids Res., 2015

The iceLogo web server and SOAP service for determining protein consensus sequences.
Nucleic Acids Res., 2015

MS2PIP prediction server: compute and visualize MS2 peak intensity predictions for CID and HCD fragmentation.
Nucleic Acids Res., 2015

About Dice, Bouldering, and Team Empowerment: Running the CompOmics Group at VIB and Ghent University, Belgium.
PLoS Comput. Biol., 2013

LNCipedia: a database for annotated human lncRNA transcript sequences and structures.
Nucleic Acids Res., 2013

The Online Protein Processing Resource (TOPPR): a database and analysis platform for protein processing events.
Nucleic Acids Res., 2013

CellMissy: a tool for management, storage and analysis of cell migration data produced in wound healing-like assays.
Bioinform., 2013

MS<sup>2</sup>PIP: a tool for MS/MS peak intensity prediction.
Bioinform., 2013

Delsa Workshop IV: Launching the Quantified Human Initiative.
Big Data, 2013

Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.
Big Data, 2013

Computational and Statistical Methods for Protein Quantification by Mass Spectrometry.
Wiley, ISBN: 978-1-119-96400-1, 2013

iTRAQ Data Interpretation.
Proceedings of the Quantitative Methods in Proteomics, 2012

compomics-utilities: an open-source Java library for computational proteomics.
BMC Bioinform., 2011

The Proteomics Identifications database: 2010 update.
Nucleic Acids Res., 2010

The Ontology Lookup Service: bigger and better.
Nucleic Acids Res., 2010

OLS Dialog: An open-source front end to the Ontology Lookup Service.
BMC Bioinform., 2010

Using the PRIDE Proteomics Identifications Database for Knowledge Discovery and Data Analysis.
Proceedings of the Proteome Bioinformatics, 2010

PRIDE: new developments and new datasets.
Nucleic Acids Res., 2008

The Ontology Lookup Service: more data and better tools for controlled vocabulary queries.
Nucleic Acids Res., 2008

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.
BMC Bioinform., 2007

Analysing latent topics in large-scale proteomics.
Proceedings of the LWA 2007: Lernen - Wissen, 2007

An Application of Latent Topic Document Analysis to Large-Scale Proteomics Databases.
Proceedings of the German Conference on Bioinformatics, 2007

PRIDE: a public repository of protein and peptide identifications for the proteomics community.
Nucleic Acids Res., 2006

Cell_motility: a cross-platform, open source application for the study of cell motion paths.
BMC Bioinform., 2006

DBToolkit: processing protein databases for peptide-centric proteomics.
Bioinform., 2005