Patrice Koehl

According to our database, Patrice Koehl authored at least 33 papers between 2000 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

A Physicist's View on Partial 3D Shape Matching.

Patrice Koehl, Henri Orland

Algorithms, July, 2023

Computing the Gromov-Wasserstein Distance between Two Surface Meshes Using Optimal Transport.

Patrice Koehl, Marc Delarue, Henri Orland

Algorithms, March, 2023

Computing the Volume, Surface Area, Mean, and Gaussian Curvatures of Molecules and Their Derivatives.

Patrice Koehl, Arseniy V. Akopyan, Herbert Edelsbrunner

J. Chem. Inf. Model., February, 2023

2022

Stable Evaluation of 3D Zernike Moments for Surface Meshes.

Jérôme Houdayer, Patrice Koehl

Algorithms, 2022

2021

Parameterizing elastic network models to capture the dynamics of proteins.

Patrice Koehl, Henri Orland, Marc Delarue

J. Comput. Chem., 2021

2018

Eleven quick tips for running an interdisciplinary short course for new graduate students.

Timothy E. Saunders, Cynthia Y. He, Patrice Koehl, Lee-Ling Sharon Ong, Peter T. C. So

PLoS Comput. Biol., 2018

2017

Comparing shapes of genus-zero surfaces.

Joel Hass, Patrice Koehl

J. Appl. Comput. Topol., 2017

A weighted string kernel for protein fold recognition.

Saghi Nojoomi, Patrice Koehl

BMC Bioinform., 2017

String kernels for protein sequence comparisons: improved fold recognition.

Saghi Nojoomi, Patrice Koehl

BMC Bioinform., 2017

2014

Automatic Alignment of Genus-Zero Surfaces.

Patrice Koehl, Joel Hass

IEEE Trans. Pattern Anal. Mach. Intell., 2014

Identifying essential pairwise interactions in elastic network model using the alpha shape theory.

Fei Xia, Dudu Tong, Lifeng Yang, Dayong Wang, Steven C. H. Hoi, Patrice Koehl, Lanyuan Lu

J. Comput. Chem., 2014

2013

An analytical method for computing atomic contact areas in biomolecules.

Paul Mach, Patrice Koehl

J. Comput. Chem., 2013

Globally Optimal Cortical Surface Matching with Exact Landmark Correspondence.

Alex Tsui, Devin Fenton, Phong Vuong, Joel Hass, Patrice Koehl, Nina Amenta, David Coeurjolly, Charles DeCarli, Owen T. Carmichael

Proceedings of the Information Processing in Medical Imaging, 2013

2012

Fast Recursive Computation of 3D Geometric Moments from Surface Meshes.

Patrice Koehl

IEEE Trans. Pattern Anal. Mach. Intell., 2012

The H-factor as a novel quality metric for homology modeling.

Eric di Luccio, Patrice Koehl

J. Clin. Bioinform., 2012

2011

AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models.

Frédéric Poitevin, Henri Orland, Sebastian Doniach, Patrice Koehl, Marc Delarue

Nucleic Acids Res., 2011

Geometric measures of large biomolecules: Surface, volume, and pockets.

Paul Mach, Patrice Koehl

J. Comput. Chem., 2011

Adaptive skin meshes coarsening for biomolecular simulation.

Xinwei Shi, Patrice Koehl

Comput. Aided Geom. Des., 2011

A quality metric for homology modeling: the H-factor.

Eric di Luccio, Patrice Koehl

BMC Bioinform., 2011

2010

Sampling the conformation of protein surface residues for flexible protein docking.

Patricia Francis-Lyon, Shengyin Gu, Joel Hass, Nina Amenta, Patrice Koehl

BMC Bioinform., 2010

2009

Adaptive surface meshes coarsening with guaranteed quality and topology.

Xinwei Shi, Patrice Koehl

Proceedings of the 2009 Computer Graphics International Conference, 2009

2008

Visual Analysis of Biomolecular Surfaces.

Vijay Natarajan, Patrice Koehl, Yusu Wang, Bernd Hamann

Proceedings of the Visualization in Medicine and Life Sciences., 2008

2007

MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape.

Joel Franklin, Patrice Koehl, Sebastian Doniach, Marc Delarue

Nucleic Acids Res., 2007

A Geometric Representation of Protein Sequences.

Shengyin Gu, Olivier Poch, Bernd Hamann, Patrice Koehl

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

2006

NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis.

Erik Lindahl, Cyril Azuara, Patrice Koehl, Marc Delarue

Nucleic Acids Res., 2006

PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics.

Cyril Azuara, Erik Lindahl, Patrice Koehl, Henri Orland, Marc Delarue

Nucleic Acids Res., 2006

Geometric filtering of pairwise atomic interactions applied to the design of efficient statistical potentials.

Afra Zomorodian, Leonidas J. Guibas, Patrice Koehl

Comput. Aided Geom. Des., 2006

2005

Inverse Kinematics in Biology: The Protein Loop Closure Problem.

Rachel Kolodny, Leonidas J. Guibas, Michael Levitt, Patrice Koehl

Int. J. Robotics Res., 2005

2004

The ASTRAL Compendium in 2004.

John-Marc Chandonia, Gary Chung Hon, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl, Michael Levitt, Steven E. Brenner

Nucleic Acids Res., 2004

The Area Derivative of a Space-Filling Diagram.

Robert L. Bryant, Herbert Edelsbrunner, Patrice Koehl, Michael Levitt

Discret. Comput. Geom., 2004

2002

ASTRAL compendium enhancements.

John-Marc Chandonia, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl, Michael Levitt, Steven E. Brenner

Nucleic Acids Res., 2002

Algorithmic issues in modeling motion.

Pankaj K. Agarwal, Leonidas J. Guibas, Herbert Edelsbrunner, Jeff Erickson, Michael Isard, Sariel Har-Peled, John Hershberger, Christian S. Jensen, Lydia E. Kavraki, Patrice Koehl, Ming C. Lin, Dinesh Manocha, Dimitris N. Metaxas, Brian Mirtich, David M. Mount, S. Muthukrishnan, Dinesh K. Pai, Elisha Sacks, Jack Snoeyink, Subhash Suri, Ouri Wolfson

ACM Comput. Surv., 2002

2000

The ASTRAL compendium for protein structure and sequence analysis.

Steven E. Brenner, Patrice Koehl, Michael Levitt

Nucleic Acids Res., 2000