Jean Muller

According to our database, Jean Muller authored at least 16 papers between 2003 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

The AnnotSV webserver in 2023: updated visualization and ranking.

Véronique Geoffroy, Jean-Baptiste Lamouche, Thomas Guignard, Samuel Nicaise, Arnaud Kress, Sophie Scheidecker, Antony Le Béchec, Jean Muller

Nucleic Acids Res., July, 2023

2021

AnnotSV and knotAnnotSV: a web server for human structural variations annotations, ranking and analysis.

Véronique Geoffroy, Thomas Guignard, Arnaud Kress, Jean-Baptiste Gaillard, Tor Solli-Nowlan, Audrey Schalk, Vincent Gatinois, Hélène Dollfus, Sophie Scheidecker, Jean Muller

Nucleic Acids Res., 2021

2018

AnnotSV: an integrated tool for structural variations annotation.

Véronique Geoffroy, Yvan Herenger, Arnaud Kress, Corinne Stoetzel, Amélie Piton, Hélène Dollfus, Jean Muller

Bioinform., 2018

2012

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.

Sean Powell, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth, Michael Kuhn, Jean Muller, Roland Arnold, Thomas Rattei, Ivica Letunic, Tobias Doerks, Lars Juhl Jensen, Christian von Mering, Peer Bork

Nucleic Acids Res., 2012

KD4v: comprehensible knowledge discovery system for missense variant.

Tien-Dao Luu, Alin Rusu, Vincent Walter, Benjamin Linard, Laetitia Poidevin, Raymond Ripp, Luc Moulinier, Jean Muller, Wolfgang Raffelsberger, Nicolas Wicker, Odile Lecompte, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen

Nucleic Acids Res., 2012

MSV3d: database of human MisSense variants mapped to 3D protein structure.

Tien-Dao Luu, Alin-Mihai Rusu, Vincent Walter, Raymond Ripp, Luc Moulinier, Jean Muller, Thierry Toursel, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen

Database J. Biol. Databases Curation, 2012

2011

Identifying Single Copy Orthologs in Metazoa.

Christopher J. Creevey, Jean Muller, Tobias Doerks, Julie Dawn Thompson, Detlev Arendt, Peer Bork

PLoS Comput. Biol., 2011

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.

Damian Szklarczyk, Andrea Franceschini, Michael Kuhn, Milan Simonovic, Alexander Roth, Pablo Minguez, Tobias Doerks, Manuel Stark, Jean Muller, Peer Bork, Lars Juhl Jensen, Christian von Mering

Nucleic Acids Res., 2011

2010

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.

Jean Muller, Damian Szklarczyk, Philippe Julien, Ivica Letunic, Alexander Roth, Michael Kuhn, Sean Powell, Christian von Mering, Tobias Doerks, Lars Juhl Jensen, Peer Bork

Nucleic Acids Res., 2010

AQUA: automated quality improvement for multiple sequence alignments.

Jean Muller, Christopher J. Creevey, Julie Dawn Thompson, Detlev Arendt, Peer Bork

Bioinform., 2010

2009

STRING 8 - a global view on proteins and their functional interactions in 630 organisms.

Lars Juhl Jensen, Michael Kuhn, Manuel Stark, Samuel Chaffron, Christopher J. Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering

Nucleic Acids Res., 2009

2008

eggNOG: automated construction and annotation of orthologous groups of genes.

Lars Juhl Jensen, Philippe Julien, Michael Kuhn, Christian von Mering, Jean Muller, Tobias Doerks, Peer Bork

Nucleic Acids Res., 2008

A maximum likelihood approximation method for Dirichlet's parameter estimation.

Nicolas Wicker, Jean Muller, Ravi Kiran Reddy Kalathur, Olivier Poch

Comput. Stat. Data Anal., 2008

2006

ICDS database: interrupted CoDing sequences in prokaryotic genomes.

Emmanuel Perrodou, Caroline Deshayes, Jean Muller, Christine Schaeffer, Alain Van Dorsselaer, Raymond Ripp, Olivier Poch, Jean-Marc Reyrat, Odile Lecompte

Nucleic Acids Res., 2006

2005

GOAnno: GO annotation based on multiple alignment.

Frédéric Chalmel, Aurélie Lardenois, Julie Dawn Thompson, Jean Muller, José-Alain Sahel, Thierry Léveillard, Olivier Poch

Bioinform., 2005

2003

PipeAlign: a new toolkit for protein family analysis.

Frédéric Plewniak, Laurent Bianchetti, Yann Brelivet, Annaick Carles, Frédéric Chalmel, Odile Lecompte, Thiebaut Mochel, Luc Moulinier, Arnaud Muller, Jean Muller, Veronique Prigent, Raymond Ripp, Jean-Claude Thierry, Julie Dawn Thompson, Nicolas Wicker, Olivier Poch

Nucleic Acids Res., 2003