Omer S. Alkhnbashi

According to our database, Omer S. Alkhnbashi authored at least 13 papers between 2014 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

A description language for enhancing transparency and interoperability in blockchain smart contracts.

Omar Mohammed Bawazeer, Md. Mahfuzur Rahman, Omer S. Alkhnbashi, Mohammad Hammoudeh

Clust. Comput., October, 2025

An evolutionary approach to predict the orientation of CRISPR arrays.

Axel Fehrenbach, Alexander Mitrofanov, Omer S. Alkhnbashi, Rolf Backofen, Franz Baumdicker

PLoS Comput. Biol., 2025

2024

Education in Transition: Adapting and Thriving in a Post-COVID World.

Omer S. Alkhnbashi, Rasheed Mohammad, Doaa M. Bamasoud

Syst., 2024

Optimizing Large Language Models for Arabic Healthcare Communication: A Focus on Patient-Centered NLP Applications.

Rasheed Mohammad, Omer S. Alkhnbashi, Mohammad Hammoudeh

Big Data Cogn. Comput., 2024

Aspect-Based Sentiment Analysis of Patient Feedback Using Large Language Models.

Omer S. Alkhnbashi, Rasheed Mohammad, Mohammad Hammoudeh

Big Data Cogn. Comput., 2024

2022

CRISPRtracrRNA: robust approach for CRISPR tracrRNA detection.

Alexander Mitrofanov, Marcus Ziemann, Omer S. Alkhnbashi, Wolfgang R. Hess, Rolf Backofen

Bioinform., 2022

RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria.

Rick Gelhausen, Teresa Müller, Sarah L. Svensson, Omer S. Alkhnbashi, Cynthia M. Sharma, Florian Eggenhofer, Rolf Backofen

Briefings Bioinform., 2022

2021

<tt>CRISPRloci: </tt> comprehensive and accurate annotation of CRISPR-Cas systems.

Omer S. Alkhnbashi, Alexander Mitrofanov, Robson Bonidia, Martin Raden, Van Dinh Tran, Florian Eggenhofer, Shiraz A. Shah, Ekrem Öztürk, Victor Alexandre Padilha, Danilo Sipoli Sanches, André C. P. L. F. de Carvalho, Rolf Backofen

Nucleic Acids Res., 2021

Casboundary: automated definition of integral Cas cassettes.

Victor Alexandre Padilha, Omer S. Alkhnbashi, Van Dinh Tran, Shiraz A. Shah, André C. P. L. F. de Carvalho, Rolf Backofen

Bioinform., 2021

2018

Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen

Nucleic Acids Res., 2018

2017

Computational characterisation of genomic CRISPR-Cas systems in archaea and bacteria

Omer S. Alkhnbashi

PhD thesis, 2017

2016

Characterizing leader sequences of CRISPR loci.

Omer S. Alkhnbashi, Shiraz A. Shah, Roger A. Garrett, Sita J. Saunders, Fabrizio Costa, Rolf Backofen

Bioinform., 2016

2014

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci.

Omer S. Alkhnbashi, Fabrizio Costa, Shiraz A. Shah, Roger A. Garrett, Sita J. Saunders, Rolf Backofen

Bioinform., 2014