Steffen Heyne

According to our database, Steffen Heyne authored at least 14 papers between 2009 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

snakePipes: facilitating flexible, scalable and integrative epigenomic analysis.

Vivek Bhardwaj, Steffen Heyne, Katarzyna Sikora, Leily Rabbani, Michael Rauer, Fabian Kilpert, Andreas S. Richter, Devon Patrick Ryan, Thomas Manke

Bioinform., 2019

2018

Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen

Nucleic Acids Res., 2018

2016

deepTools2: a next generation web server for deep-sequencing data analysis.

Fidel Ramírez, Devon Patrick Ryan, Björn A. Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S. Richter, Steffen Heyne, Friederike Dündar, Thomas Manke

Nucleic Acids Res., 2016

2014

Using local RNA secondary structures for computational comparison and clustering of RNA molecules

Steffen Heyne

PhD thesis, 2014

Local Exact Pattern Matching for Non-FixedRNA Structures.

Mika Amit, Rolf Backofen, Steffen Heyne, Gad M. Landau, Mathias Möhl, Christina Otto, Sebastian Will

IEEE ACM Trans. Comput. Biol. Bioinform., 2014

ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs.

Christina Otto, Mathias Möhl, Steffen Heyne, Mika Amit, Gad M. Landau, Rolf Backofen, Sebastian Will

BMC Bioinform., 2014

Scalable structural clustering of local RNA secondary structures.

Fabrizio Costa, Steffen Heyne, Dominic Rose, Rolf Backofen

Proceedings of the 1st Workshop on Computational Methods for Structural RNAs (CMSR 2014), 2014

2013

LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search.

Sebastian Will, Michael F. Siebauer, Steffen Heyne, Jan Engelhardt, Peter F. Stadler, Kristin Reiche, Rolf Backofen

Algorithms Mol. Biol., 2013

2012

Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches.

Nuno D. Mendes, Steffen Heyne, Ana T. Freitas, Marie-France Sagot, Rolf Backofen

Bioinform., 2012

GraphClust: alignment-free structural clustering of local RNA secondary structures.

Steffen Heyne, Fabrizio Costa, Dominic Rose, Rolf Backofen

Bioinform., 2012

Exact Pattern Matching for RNA Structure Ensembles.

Christina Schmiedl, Mathias Möhl, Steffen Heyne, Mika Amit, Gad M. Landau, Sebastian Will, Rolf Backofen

Proceedings of the Research in Computational Molecular Biology, 2012

Local Exact Pattern Matching for Non-fixed RNA Structures.

Mika Amit, Rolf Backofen, Steffen Heyne, Gad M. Landau, Mathias Möhl, Christina Schmiedl, Sebastian Will

Proceedings of the Combinatorial Pattern Matching - 23rd Annual Symposium, 2012

2010

Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA.

Cameron Smith, Steffen Heyne, Andreas S. Richter, Sebastian Will, Rolf Backofen

Nucleic Acids Res., 2010

2009

Lightweight comparison of RNAs based on exact sequence-structure matches.

Steffen Heyne, Sebastian Will, Michael Beckstette, Rolf Backofen

Bioinform., 2009