Philip Bradley

According to our database, Philip Bradley authored at least 9 papers between 2007 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

TCR2HLA: Calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypes.

Koshlan Mayer-Blackwell, Anastasia A. Minervina, Mikhail Pogorelyy, Puneet Rawat, Melanie R. Shapiro, Leeana D. Peters, Emily S. Ford, Amanda Posgai, Kasi Vegesana, Samuel Minot, David M. Koelle, Victor Greiff, Philip Bradley, Todd M. Brusko, Paul G. Thomas, Andrew Fiore-Gartland

PLoS Comput. Biol., 2026

2025

T-cell receptor specificity landscape revealed through de novo peptide design.

Gian Marco Visani, Michael N. Pun, Anastasia A. Minervina, Philip Bradley, Paul Thomas, Armita Nourmohammad

CoRR, March, 2025

2023

Neural network models for sequence-based TCR and HLA association prediction.

Si Liu, Philip Bradley, Wei Sun

PLoS Comput. Biol., November, 2023

2022

Comparing T cell receptor repertoires using optimal transport.

Branden J. Olson, Stefan A. Schattgen, Paul G. Thomas, Philip Bradley, Frederick A. Matsen IV

PLoS Comput. Biol., December, 2022

Learning the shape of protein micro-environments with a holographic convolutional neural network.

Michael N. Pun, Andrew Ivanov, Quinn Bellamy, Zachary Montague, Colin H. LaMont, Philip Bradley, Jakub Otwinowski, Armita Nourmohammad

CoRR, 2022

2020

Better together: Elements of successful scientific software development in a distributed collaborative community.

Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William R. Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland L. Dunbrack Jr., Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau

PLoS Comput. Biol., 2020

2015

Rational design of α-helical tandem repeat proteins with closed architectures.

Lindsey Doyle, Jazmine Hallinan, Jill Bolduc, Fabio Parmeggiani, David Baker, Barry L. Stoddard, Philip Bradley

Nat., 2015

2010

How do amino acid mismatches affect the outcome of hematopoietic cell transplants?: a structural perspective.

Chen Yanover, Mari Malkki, Ted Gooley, Effie W. Petersdorf, Philip Bradley

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2007

Feature Selection Methods for Improving Protein Structure Prediction with Rosetta.

Ben Blum, Michael I. Jordan, David E. Kim, Rhiju Das, Philip Bradley, David Baker

Proceedings of the Advances in Neural Information Processing Systems 20, 2007