Roland L. Dunbrack Jr.

According to our database, Roland L. Dunbrack Jr. authored at least 21 papers between 2000 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

The protein common assembly database (ProtCAD) - a comprehensive structural resource of protein complexes.

Qifang Xu, Roland L. Dunbrack Jr.

Nucleic Acids Res., January, 2023

2022

PDBe-KB: collaboratively defining the biological context of structural data.

Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar

Nucleic Acids Res., 2022

Kincore: a web resource for structural classification of protein kinases and their inhibitors.

Vivek Modi, Roland L. Dunbrack Jr.

Nucleic Acids Res., 2022

2020

Better together: Elements of successful scientific software development in a distributed collaborative community.

Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William R. Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland L. Dunbrack Jr., Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau

PLoS Comput. Biol., 2020

2019

A new clustering and nomenclature for beta turns derived from high-resolution protein structures.

Maxim V. Shapovalov, Slobodan Vucetic, Roland L. Dunbrack Jr.

PLoS Comput. Biol., 2019

2018

RosettaAntibodyDesign (RAbD): A general framework for computational antibody design.

Jared Adolf-Bryfogle, Oleksandr Kalyuzhniy, Michael Kubitz, Brian D. Weitzner, Xiaozhen Hu, Yumiko Adachi, William R. Schief, Roland L. Dunbrack Jr.

PLoS Comput. Biol., 2018

2015

PyIgClassify: a database of antibody CDR structural classifications.

Jared Adolf-Bryfogle, Qifang Xu, Benjamin North, Andreas Lehmann, Roland L. Dunbrack Jr.

Nucleic Acids Res., 2015

2013

Charge asymmetry in the proteins of the outer membrane.

Joanna S. G. Slusky, Roland L. Dunbrack Jr.

Bioinform., 2013

2012

Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB.

Qifang Xu, Roland L. Dunbrack Jr.

Bioinform., 2012

2011

The protein common interface database (ProtCID) - a comprehensive database of interactions of homologous proteins in multiple crystal forms.

Qifang Xu, Roland L. Dunbrack Jr.

Nucleic Acids Res., 2011

2010

Neighbor-Dependent Ramachandran Probability Distributions of Amino Acids Developed from a Hierarchical Dirichlet Process Model.

Daniel Ting, Guoli Wang, Maxim V. Shapovalov, Rajib Mitra, Michael I. Jordan, Roland L. Dunbrack Jr.

PLoS Comput. Biol., 2010

Will Widgets and Semantic Tagging Change Computational Biology?

Philip E. Bourne, Bojan Beran, Chunxiao Bi, Wolfgang Bluhm, Roland L. Dunbrack Jr., Andreas Prlic, Greg B. Quinn, Peter W. Rose, Raship Shah, Wendy Tao, Brian D. Weitzner, Benjamin T. Yukich

PLoS Comput. Biol., 2010

2007

ProtBuD: a database of biological unit structures of protein families and superfamilies.

Qifang Xu, Adrian A. Canutescu, Zoran Obradovic, Roland L. Dunbrack Jr.

Bioinform., 2007

BioDownloader: bioinformatics downloads and updates in a few clicks.

Maxim V. Shapovalov, Adrian A. Canutescu, Roland L. Dunbrack Jr.

Bioinform., 2007

2005

PISCES: recent improvements to a PDB sequence culling server.

Guoli Wang, Roland L. Dunbrack Jr.

Nucleic Acids Res., 2005

Quasi-consensus-based comparison of profile hidden Markov models for protein sequences.

Robel Y. Kahsay, Guoli Wang, Guang R. Gao, Li Liao, Roland L. Dunbrack Jr.

Bioinform., 2005

MollDE: a homology modeling framework you can click with.

Adrian A. Canutescu, Roland L. Dunbrack Jr.

Bioinform., 2005

2003

PISCES: a protein sequence culling server.

Guoli Wang, Roland L. Dunbrack Jr.

Bioinform., 2003

2002

CASA: a server for the critical assessment of protein sequence alignment accuracy.

Robel Y. Kahsay, Guoli Wang, Nataraj Dongre, Guang R. Gao, Roland L. Dunbrack Jr.

Bioinform., 2002

BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster.

Jeffrey D. Grant, Roland L. Dunbrack Jr., Frank J. Manion, Michael F. Ochs

Bioinform., 2002

2000

Genomic Fold Assignment and Rational Modeling of Proteins of Biological Interest.

J. Michael Sauder, Roland L. Dunbrack Jr.

Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000