Rhiju Das

According to our database, Rhiju Das authored at least 18 papers between 2007 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Deep learning models for predicting RNA degradation via dual crowdsourcing.

Hannah K. Wayment-Steele, Wipapat Kladwang, Andrew M. Watkins, Do Soon Kim, Bojan Tunguz, Walter Reade, Maggie Demkin, Jonathan Romano, Roger Wellington-Oguri, John J. Nicol, Jiayang Gao, Kazuki Onodera, Kazuki Fujikawa, Hanfei Mao, Gilles Vandewiele, Michele Tinti, Bram Steenwinckel, Takuya Ito, Taiga Noumi, Shujun He, Keiichiro Ishi, Youhan Lee, Fatih Öztürk, King Yuen Chiu, Emin Öztürk, Karim Amer, Mohamed Fares, Rhiju Das

Nat. Mac. Intell., December, 2022

2021

Predictive models of RNA degradation through dual crowdsourcing.

Hannah K. Wayment-Steele, Wipapat Kladwang, Andrew M. Watkins, Do Soon Kim, Bojan Tunguz, Walter Reade, Maggie Demkin, Jonathan Romano, Roger Wellington-Oguri, John J. Nicol, Jiayang Gao, Kazuki Onodera, Kazuki Fujikawa, Hanfei Mao, Gilles Vandewiele, Michele Tinti, Bram Steenwinckel, Takuya Ito, Taiga Noumi, Shujun He, Keiichiro Ishi, Youhan Lee, Fatih Öztürk, Anthony Chiu, Emin Öztürk, Karim Amer, Mohamed Fares, Eterna Participants, Rhiju Das

CoRR, 2021

2019

EternaBrain: Automated RNA design through move sets and strategies from an Internet-scale RNA videogame.

Rohan V. Koodli, Benjamin Keep, Katherine R. Coppess, Fernando Portela, Rhiju Das

PLoS Comput. Biol., 2019

RNA 3D structure prediction guided by independent folding of homologous sequences.

Marcin Magnus, Kalli Kappel, Rhiju Das, Janusz M. Bujnicki

BMC Bioinform., 2019

2018

Updates to the RNA mapping database (RMDB), version 2.

Joseph D. Yesselman, Siqi Tian, Xin Liu, Lei Shi, Jin Billy Li, Rhiju Das

Nucleic Acids Res., 2018

SentRNA: Improving computational RNA design by incorporating a prior of human design strategies.

Jade Shi, Rhiju Das, Vijay S. Pande

CoRR, 2018

2017

Primerize-2D: automated primer design for RNA multidimensional chemical mapping.

Siqi Tian, Rhiju Das

Bioinform., 2017

2015

Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis.

Pablo Cordero, Rhiju Das

PLoS Comput. Biol., 2015

RNA-Redesign: a web server for fixed-backbone 3D design of RNA.

Joseph D. Yesselman, Rhiju Das

Nucleic Acids Res., 2015

Primerize: automated primer assembly for transcribing non-coding RNA domains.

Siqi Tian, Joseph D. Yesselman, Pablo Cordero, Rhiju Das

Nucleic Acids Res., 2015

Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles.

Seungmyung Lee, Hanjoo Kim, Siqi Tian, Taehoon Lee, Sungroh Yoon, Rhiju Das

Bioinform., 2015

2014

Blind Predictions of DNA and RNA Tweezers Experiments with Force and Torque.

Fang-Chieh Chou, Jan Lipfert, Rhiju Das

PLoS Comput. Biol., 2014

2013

HiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresis.

Hanjoo Kim, Pablo Cordero, Rhiju Das, Sungroh Yoon

Nucleic Acids Res., 2013

2012

An RNA Mapping DataBase for curating RNA structure mapping experiments.

Pablo Cordero, Julius B. Lucks, Rhiju Das

Bioinform., 2012

2011

The Stanford RNA Mapping Database for sharing and visualizing RNA structure mapping experiments

Pablo Cordero, Julius B. Lucks, Rhiju Das

CoRR, 2011

HiTRACE: high-throughput robust analysis for capillary electrophoresis.

Sungroh Yoon, Jinkyu Kim, Justine Hum, Hanjoo Kim, Seunghyun Park, Wipapat Kladwang, Rhiju Das

Bioinform., 2011

2009

A robust peak detection method for RNA structure inference by high-throughput contact mapping.

Jinkyu Kim, Seunghak Yu, Byonghyo Shim, Hanjoo Kim, Hyeyoung Min, Eui-Young Chung, Rhiju Das, Sungroh Yoon

Bioinform., 2009

2007

Feature Selection Methods for Improving Protein Structure Prediction with Rosetta.

Ben Blum, Michael I. Jordan, David E. Kim, Rhiju Das, Philip Bradley, David Baker

Proceedings of the Advances in Neural Information Processing Systems 20, 2007