Pier Luigi Martelli

According to our database1, Pier Luigi Martelli authored at least 52 papers between 1999 and 2020.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


Online presence:

On csauthors.net:


Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito.
BMC Bioinform., 2020

DeepLGP: a novel deep learning method for prioritizing lncRNA target genes.
Bioinform., 2020

Feature selection and classification of noisy proteomics mass spectrometry data based on one-bit perturbed compressed sensing.
Bioinform., 2020

LabxDB: versatile databases for genomic sequencing and lab management.
Bioinform., 2020

DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks.
Bioinform., 2020

Transmembrane Domain Prediction.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Protein Functional Annotation.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

On the biases in predictions of protein stability changes upon variations: the INPS test case.
Bioinform., 2019

A natural upper bound to the accuracy of predicting protein stability changes upon mutations.
Bioinform., 2019

BUSCA: an integrative web server to predict subcellular localization of proteins.
Nucleic Acids Res., 2018

DeepSig: deep learning improves signal peptide detection in proteins.
Bioinform., 2018

The Bologna Annotation Resource (BAR 3.0): improving protein functional annotation.
Nucleic Acids Res., 2017

SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments.
Bioinform., 2017

ISPRED4: interaction sites PREDiction in protein structures with a refining grammar model.
Bioinform., 2017

INPS-MD: a web server to predict stability of protein variants from sequence and structure.
Bioinform., 2016

NET-GE: a web-server for NETwork-based human gene enrichment.
Bioinform., 2016

TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins.
Bioinform., 2015

INPS: predicting the impact of non-synonymous variations on protein stability from sequence.
Bioinform., 2015

TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs.
Bioinform., 2014

Extended and Robust Protein Sequence Annotation over Conservative Nonhierarchical Clusters: The Case Study of the ABC Transporters.
ACM J. Emerg. Technol. Comput. Syst., 2013

Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations.
BMC Bioinform., 2013

How to inherit statistically validated annotation within BAR+ protein clusters.
BMC Bioinform., 2013

MIMO: an efficient tool for molecular interaction maps overlap.
BMC Bioinform., 2013

BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming.
Bioinform., 2013

The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields.
Bioinform., 2013

SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation.
Database J. Biol. Databases Curation, 2013

Protein Sequence Annotation by means of Community Detection.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

Community Detection within Clusters Helps Large Scale Protein Annotation - Preliminary Results of Modularity Maximization for the BAR+ Database.
Proceedings of the BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11, 2013

The human "magnesome": detecting magnesium binding sites on human proteins.
BMC Bioinform., 2012

BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences.
Nucleic Acids Res., 2011

MemPype: a pipeline for the annotation of eukaryotic membrane proteins.
Nucleic Acids Res., 2011

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.
Nucleic Acids Res., 2011

Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization.
Bioinform., 2011

MemLoci: predicting subcellular localization of membrane proteins in eukaryotes.
Bioinform., 2011

Machine-Learning Methods to Predict Protein Interaction Sites in Folded Proteins.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2011

Prediction of the Bonding State of Cysteine Residues in Proteins with Machine-Learning Methods.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2010

Grammatical-Restrained Hidden Conditional Random Fields for Bioinformatics applications.
Algorithms Mol. Biol., 2009

Prediction of Protein-Protein Interacting Sites: How to Bridge Molecular Events to Large Scale Protein Interaction Networks.
Proceedings of the Computational Methods in Systems Biology, 7th International Conference, 2009

PredGPI: a GPI-anchor predictor.
BMC Bioinform., 2008

Predicting protein thermostability changes from sequence upon multiple mutations.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

eSLDB: eukaryotic subcellular localization database.
Nucleic Acids Res., 2007

High Throughput Comparison of Prokaryotic Genomes.
Proceedings of the Parallel Processing and Applied Mathematics, 2007

PONGO: a web server for multiple predictions of all-alpha transmembrane proteins.
Nucleic Acids Res., 2006

BaCelLo: a balanced subcellular localization predictor.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

TRAMPLE: the transmembrane protein labelling environment.
Nucleic Acids Res., 2005

A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins.
BMC Bioinform., 2005

MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments.
Bioinform., 2003

In silico prediction of the structure of membrane proteins: Is it feasible?
Briefings Bioinform., 2003

A neural network method to improve prediction of protein-protein interaction sites in heterocomplexes.
Proceedings of the NNSP 2003, 2003

An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

A Data Base of Minimally Frustrated Alpha-Helical Segments Extracted from Proteins According to an Entropy Criterion.
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999