Ernesto Picardi

Orcid: 0000-0002-6549-0114

According to our database1, Ernesto Picardi authored at least 28 papers between 2006 and 2023.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

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Bibliography

2023
UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions.
Nucleic Acids Res., January, 2023

2021
REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments.
Nucleic Acids Res., 2021

Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities.
Briefings Bioinform., 2021

2020
HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis.
BMC Bioinform., 2020

ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community.
BMC Bioinform., 2020

Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data.
Briefings Bioinform., 2020

2019
Elucidating the editome: bioinformatics approaches for RNA editing detection.
Briefings Bioinform., 2019

2017
REDIportal: a comprehensive database of A-to-I RNA editing events in humans.
Nucleic Acids Res., 2017

2014
EasyCluster2: an improved tool for clustering and assembling long transcriptome reads.
BMC Bioinform., 2014

MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing.
Bioinform., 2014

2013
SpliceAid-F: a database of human splicing factors and their RNA-binding sites.
Nucleic Acids Res., 2013

WEP: a high-performance analysis pipeline for whole-exome data.
BMC Bioinform., 2013

REDItools: high-throughput RNA editing detection made easy.
Bioinform., 2013

Clustering and Assembling Large Transcriptome Datasets by EasyCluster2.
Proceedings of the Emerging Intelligent Computing Technology and Applications, 2013

2012
PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text.
BMC Bioinform., 2012

2011
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.
Nucleic Acids Res., 2011

ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments.
Bioinform., 2011

A Novel Approach to Clustering and Assembly of Large-Scale Roche 454 Transcriptome Data for Gene Validation and Alternative Splicing Analysis.
Proceedings of the Bio-Inspired Computing and Applications, 2011

2010
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res., 2010

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.
Briefings Bioinform., 2010

New Tools for Expression Alternative Splicing Validation.
Proceedings of the Advanced Intelligent Computing Theories and Applications, 2010

2009
Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach.
J. Comput. Biol., 2009

EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.
BMC Bioinform., 2009

2008
Is plant mitochondrial RNA editing a source of phylogenetic incongruence? An answer from <i>in silico</i> and <i>in vivo</i> data sets.
BMC Bioinform., 2008

ASPicDB: A database resource for alternative splicing analysis.
Bioinform., 2008

GenePC and ASPIC Integrate Gene Predictions with Expressed Sequence Alignments To Predict Alternative Transcripts.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

2007
REDIdb: the RNA editing database.
Nucleic Acids Res., 2007

2006
EdiPy: A resource to simulate the evolution of plant mitochondrial genes under the RNA editing.
Comput. Biol. Chem., 2006


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