Qinghua Cui

Orcid: 0000-0003-3018-5221

According to our database1, Qinghua Cui authored at least 48 papers between 2004 and 2023.

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Bibliography

2023
A fusion framework of deep learning and machine learning for predicting sgRNA cleavage efficiency.
Comput. Biol. Medicine, October, 2023

Defining the single base importance of human mRNAs and lncRNAs.
Briefings Bioinform., September, 2023

Solution Structures of an Electrical Transmission Line Model with Bifurcation and Chaos in Hamiltonian Dynamics.
Int. J. Bifurc. Chaos, July, 2023

Deciphering gene contributions and etiologies of somatic mutational signatures of cancer.
Briefings Bioinform., March, 2023

Global Features are All You Need for Image Retrieval and Reranking.
Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023

2022
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022.
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Nucleic Acids Res., 2022

1st Place Solution in Google Universal Images Embedding.
CoRR, 2022

2021
AGTR2, One Possible Novel Key Gene for the Entry of SARS-CoV-2 Into Human Cells.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.
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Nucleic Acids Res., 2021

A layer-stress learning framework universally augments deep neural network tasks.
CoRR, 2021

Comparative analysis of aneurysm subtypes associated genes based on protein-protein interaction network.
BMC Bioinform., 2021

Toward comprehensive functional analysis of gene lists weighted by gene essentiality scores.
Bioinform., 2021

Defining the functional divergence of orthologous genes between human and mouse in the context of miRNA regulation.
Briefings Bioinform., 2021

2020
m6Acorr: an online tool for the correction and comparison of m<sup>6</sup>A methylation profiles.
BMC Bioinform., 2020

smORFunction: a tool for predicting functions of small open reading frames and microproteins.
BMC Bioinform., 2020

Annotation and curation of the causality information in LncRNADisease.
Database J. Biol. Databases Curation, 2020

2019
TransmiR v2.0: an updated transcription factor-microRNA regulation database.
Nucleic Acids Res., 2019

MISIM v2.0: a web server for inferring microRNA functional similarity based on microRNA-disease associations.
Nucleic Acids Res., 2019

HMDD v3.0: a database for experimentally supported human microRNA-disease associations.
Nucleic Acids Res., 2019

LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases.
Nucleic Acids Res., 2019

Combining network topology with transcriptomic data for identifying radiosensitive gene signatures.
J. Comput. Methods Sci. Eng., 2019

NmSEER V2.0: a prediction tool for 2′-O-methylation sites based on random forest and multi-encoding combination.
BMC Bioinform., 2019

miES: predicting the essentiality of miRNAs with machine learning and sequence features.
Bioinform., 2019

2018
TAM 2.0: tool for MicroRNA set analysis.
Nucleic Acids Res., 2018

Comparative Analysis of Human Genes Frequently and Occasionally Regulated by m<sup>6</sup>A Modification.
Genom. Proteom. Bioinform., 2018

PTMD: A Database of Human Disease-associated Post-translational Modifications.
Genom. Proteom. Bioinform., 2018

Identification and Analysis of Human Sex-biased MicroRNAs.
Genom. Proteom. Bioinform., 2018

AGD: Aneurysm Gene Database.
Database J. Biol. Databases Curation, 2018

Identification and analysis of the human sex-biased genes.
Briefings Bioinform., 2018

NmSEER: A Prediction Tool for 2'-O-Methylation (Nm) Sites Based on Random Forest.
Proceedings of the Intelligent Computing Theories and Application, 2018

2017
An analysis of human microbe-disease associations.
Briefings Bioinform., 2017

2015
PPUS: a web server to predict PUS-specific pseudouridine sites.
Bioinform., 2015

Drug-Path: a database for drug-induced pathways.
Database J. Biol. Databases Curation, 2015

LncTar: a tool for predicting the RNA targets of long noncoding RNAs.
Briefings Bioinform., 2015

2014
HMDD v2.0: a database for experimentally supported human microRNA and disease associations.
Nucleic Acids Res., 2014

2013
LncRNADisease: a database for long-non-coding RNA-associated diseases.
Nucleic Acids Res., 2013

2012
SpliceDisease database: linking RNA splicing and disease.
Nucleic Acids Res., 2012

The relationship between rational drug design and drug side effects.
Briefings Bioinform., 2012

2011
miR2Gene: pattern discovery of single gene, multiple genes, and pathways by enrichment analysis of their microRNA regulators.
BMC Syst. Biol., 2011

miREnvironment Database: providing a bridge for microRNAs, environmental factors and phenotypes.
Bioinform., 2011

2010
TransmiR: a transcription factor-microRNA regulation database.
Nucleic Acids Res., 2010

microRNA evolution in a human transcription factor and microRNA regulatory network.
BMC Syst. Biol., 2010

TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs.
BMC Bioinform., 2010

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases.
Bioinform., 2010

2009
Protein evolution on a human signaling network.
BMC Syst. Biol., 2009

2005
Characterizing the dynamic connectivity between genes by variable parameter regression and Kalman filtering based on temporal gene expression data.
Bioinform., 2005

2004
A combinational feature selection and ensemble neural network method for classification of gene expression data.
BMC Bioinform., 2004

Esub8: A novel tool to predict protein subcellular localizations in eukaryotic organisms.
BMC Bioinform., 2004


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