Yiming Bao

According to our database, Yiming Bao authored at least 43 papers between 2007 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

McAN: a novel computational algorithm and platform for constructing and visualizing haplotype networks.

Lun Li, Bo Xu, Dongmei Tian, Anke Wang, Junwei Zhu, Cuiping Li, Na Li, Wei Zhao, Leisheng Shi, Yongbiao Xue, Zhang Zhang, Yiming Bao, Wenming Zhao, Shuhui Song

Briefings Bioinform., May, 2023

MethBank 4.0: an updated database of DNA methylation across a variety of species.

Mochen Zhang, Wenting Zong, Dong Zou, Guoliang Wang, Wei Zhao, Fei Yang, Song Wu, Xinran Zhang, Xutong Guo, Yingke Ma, Zhuang Xiong, Zhang Zhang, Yiming Bao, Rujiao Li

Nucleic Acids Res., January, 2023

ASCancer Atlas: a comprehensive knowledgebase of alternative splicing in human cancers.

Song Wu, Yue Huang, Mochen Zhang, Zheng Gong, Guoliang Wang, Xinchang Zheng, Wenting Zong, Wei Zhao, Peiqi Xing, Rujiao Li, Zhaoqi Liu, Yiming Bao

Nucleic Acids Res., January, 2023

Brain Catalog: a comprehensive resource for the genetic landscape of brain-related traits.

Siyu Pan, Hongen Kang, Xinxuan Liu, Shiqi Lin, Na Yuan, Zhang Zhang, Yiming Bao, Peilin Jia

Nucleic Acids Res., January, 2023

Cell Taxonomy: a curated repository of cell types with multifaceted characterization.

Shuai Jiang, Qiheng Qian, Tongtong Zhu, Wenting Zong, Yunfei Shang, Tong Jin, Yuansheng Zhang, Ming Chen, Zishan Wu, Yuan Chu, Rongqin Zhang, Sicheng Luo, Wei Jing, Dong Zou, Yiming Bao, Jing-Fa Xiao, Zhang Zhang

Nucleic Acids Res., January, 2023

HGD: an integrated homologous gene database across multiple species.

Guangya Duan, Gangao Wu, Xiaoning Chen, Dongmei Tian, Zhaohua Li, Yanling Sun, Zhenglin Du, Lili Hao, Shuhui Song, Yuan Gao, Jing-Fa Xiao, Zhang Zhang, Yiming Bao, Bixia Tang, Wenming Zhao

Nucleic Acids Res., January, 2023

FusePose: IMU-Vision Sensor Fusion in Kinematic Space for Parametric Human Pose Estimation.

Yiming Bao, Xu Zhao, Dahong Qian

IEEE Trans. Multim., 2023

RSB-Pose: Robust Short-Baseline Binocular 3D Human Pose Estimation with Occlusion Handling.

Xiaoyue Wan, Zhuo Chen, Yiming Bao, Xu Zhao

CoRR, 2023

2022

Ongoing Positive Selection Drives the Evolution of SARS-CoV-2 Genomes.

Yali Hou, Shilei Zhao, Qi Liu, Xiaolong Zhang, Tong Sha, Yankai Su, Wenming Zhao, Yiming Bao, Yongbiao Xue, Hua Chen

Genom. Proteom. Bioinform., December, 2022

scMethBank: a database for single-cell whole genome DNA methylation maps.

Wenting Zong, Hongen Kang, Zhuang Xiong, Yingke Ma, Tong Jin, Zheng Gong, Lizhi Yi, Mochen Zhang, Song Wu, Guoliang Wang, Yiming Bao, Rujiao Li

Nucleic Acids Res., 2022

Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels.

Yuansheng Zhang, Dong Zou, Tongtong Zhu, Tianyi Xu, Ming Chen, Guangyi Niu, Wenting Zong, Rong Pan, Wei Jing, Jian Sang, Chang Liu, Yujia Xiong, Yubin Sun, Shuang Zhai, Huanxin Chen, Wenming Zhao, Jing-Fa Xiao, Yiming Bao, Lili Hao, Zhang Zhang

Nucleic Acids Res., 2022

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022.

Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Jingyao Zeng, Yadong Zhang, Yunfei Shang, Jialin Mai, Shuo Shi, Mingming Lu, Congfan Bu, Zhewen Zhang, Zhenglin Du, Yinying Wang, Hongen Kang, Tianyi Xu, Lili Hao, Peilin Jia, Shuai Jiang, Qiheng Qian, Tongtong Zhu, Wenting Zong, Tong Jin, Yuansheng Zhang, Dong Zou, Qiang Du, Changrui Feng, Lina Ma, Sisi Zhang, Anke Wang, Lili Dong, Yanqing Wang, Wan Liu, Xing Yan, Yunchao Ling, Zhihua Zhou, Wang Kang, Tao Zhang, Shuai Ma, Haoteng Yan, Zunpeng Liu, Zejun Ji, Yusheng Cai, Si Wang, Moshi Song, Jie Ren, Qi Zhou, Jing Qu, Weiqi Zhang, Guanghui Liu, Xu Chen, Tingting Chen, Yanling Sun, Caixia Yu, Bixia Tang, Junwei Zhu, Shuang Zhai, Yubin Sun, Qiancheng Chen, Xiaoyu Yang, Xin Zhang, Zhengqi Sang, Yonggang Wang, Yilin Zhao, Huanxin Chen, Li Lan, Yingke Ma, Yaokai Jia, Xinchang Zheng, Meili Chen, Ming Chen, Guangyi Niu, Rong Pan, Wei Jing, Jian Sang, Chang Liu, Yujia Xiong, Mochen Zhang, Guoliang Wang, Lizhi Yi, Wei Zhao, Song Wu, Zhuang Xiong, Rujiao Li, Zheng Gong, Lin Liu, Zhao Li, Qianpeng Li, Sicheng Luo, Jiajia Wang, Yirong Shi, Honghong Zhou, Peng Zhang, Tingrui Song, Yanyan Li, Fei Yang, Mengwei Li, Zhaohua Li, Dongmei Tian, Xiaonan Liu, Cuiping Li, Xufei Teng, Shuhui Song, Yang Zhang, Ruru Chen, Rongqin Zhang, Feng Xu, Yifan Wang, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yungang He, Zhen Yang, Lun Li, Na Li, Ying Cui, Guangya Duan, Gangao Wu, Tianhao Huang, Enhui Jin, Hailong Kang, Zhonghuang Wang, Hua Chen, Mingkun Li, Wanshan Ning, Yu Xue, Yanhu Liu, Qijun Zhou, Xingyan Liu, Longlong Zhang, Bingyu Mao, Shihua Zhang, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Haichun Jing, Yitong Pan, Leisheng Shi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Dan Liu, Chi Zhang, Zheng Zhao, Tao Jiang, Wanying Wu, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Shaofeng Lin, Chuijie Liu, Anyuan Guo, Hao Yuan, Tianhan Su, Yong E. Zhang, Yincong Zhou, Guoji Guo, Shanshan Fu, Xiaodan Tan, Weizhi Zhang, Mei Luo, Yubin Xie, Chenwei Wang, Xingyu Liao, Xin Gao, Jianxin Wang, Guiyan Xie, Chunhui Yuan, Feng Tian, Dechang Yang, Ge Gao, Dachao Tang, Wenyi Wu, Yujie Gou, Cheng Han, Qinghua Cui, Xiangshang Li, Chuan-Yun Li, Xiaotong Luo

Nucleic Acids Res., 2022

EWAS Open Platform: integrated data, knowledge and toolkit for epigenome-wide association study.

Zhuang Xiong, Fei Yang, Mengwei Li, Yingke Ma, Wei Zhao, Guoliang Wang, Zhaohua Li, Xinchang Zheng, Dong Zou, Wenting Zong, Hongen Kang, Yaokai Jia, Rujiao Li, Zhang Zhang, Yiming Bao

Nucleic Acids Res., 2022

CeDR Atlas: a knowledgebase of cellular drug response.

Yin-Ying Wang, Hongen Kang, Tianyi Xu, Lili Hao, Yiming Bao, Peilin Jia

Nucleic Acids Res., 2022

Genomic Perspectives on the Emerging SARS-CoV-2 Omicron Variant.

Wentai Ma, Jing Yang, Haoyi Fu, Chao Su, Caixia Yu, Qihui Wang, Ana Tereza Ribeiro de Vasconcelos, Georgii A. Bazykin, Yiming Bao, Mingkun Li

Genom. Proteom. Bioinform., 2022

2021

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.

Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Zheng Gong, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Tao Zhang, Wang Kang, Fei Yang, Jing Qu, Weiqi Zhang, Guanghui Liu, Lin Liu, Yang Zhang, Guangyi Niu, Tongtong Zhu, Changrui Feng, Xiaonan Liu, Yuansheng Zhang, Zhao Li, Ruru Chen, Qianpeng Li, Zhongyi Hua, Chao Jiang, Ziyuan Chen, Fangshu He, Yuyang Zhao, Yan Jin, Luqi Huang, Yuan Yuan, Chenfen Zhou, Qingwei Xu, Sheng He, Wei Ye, Ruifang Cao, Pengyu Wang, Yunchao Ling, Xing Yan, Qingzhong Wang, Qiang Du, Wenting Zong, Hongen Kang, Zhuang Xiong, Wendi Huan, Sirui Zhang, Qiguang Xia, Xiaojuan Fan, Zefeng Wang, Xu Chen, Tingting Chen, Sisi Zhang, Bixia Tang, Lili Dong, Zhewen Zhang, Zhonghuang Wang, Hailong Kang, Yanqing Wang, Song Wu, Ming Chen, Chang Liu, Yujia Xiong, Xueying Shao, Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, Lili Zhang, Huaxia Luo, Yajing Hao, Peng Zhang, Zhi Nie, Shuhuan Yu, Jian Sang, Zhaohua Li, Xiangquan Zhang, Qing Zhou, Shuang Zhai, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Jun Yan, Chen Li, Zhennan Wang, Xiangfeng Wang, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Hai-Chun Jing, Lianhe Zhao, Jiajia Wang, Tinrui Song, Yi Zhao, Furrukh Mehmood, Shahid Ali, Amjad Ali, Shoaib Saleem, Irfan Hussain, Amir Ali Abbasi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Yiran Tu, Yu Xue, Wanying Wu, Peifeng Ji, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Wanshan Ning, Shaofeng Lin, Teng Liu, An-Yuan Guo, Hao Yuan, Yong E. Zhang, Xiaodan Tan, Weizhi Zhang, Yubin Xie, Chenwei Wang, Chun-Jie Liu, De-Chang Yang, Feng Tian, Ge Gao, Dachao Tang, Lan Yao, Qinghua Cui, Ni A. An, Chuan-Yun Li, Xiaotong Luo

Nucleic Acids Res., 2021

Aging Atlas: a multi-omics database for aging biology.

Guang-Hui Liu, Yiming Bao, Jing Qu, Weiqi Zhang, Tao Zhang, Wang Kang, Fei Yang, Qianzhao Ji, Xiaoyu Jiang, Yingke Ma, Shuai Ma, Zunpeng Liu, Siyu Chen, Si Wang, Shuhui Sun, Lingling Geng, Kaowen Yan, Pengze Yan, Yanling Fan, Moshi Song, Jie Ren, Qiaoran Wang, Shanshan Yang, Yuanhan Yang, Muzhao Xiong, Chuqiang Liang, Lan-Zhu Li, Tianling Cao, Jianli Hu, Ping Yang, Jiale Ping, Huifang Hu, Yandong Zheng, Guoqiang Sun, Jiaming Li, Lixiao Liu, Zhiran Zou, Yingjie Ding, Mingheng Li, Di Liu, Min Wang, Xiaoyan Sun, Cui Wang, Shijia Bi, Hezhen Shan, Xiao Zhuo

Nucleic Acids Res., 2021

Genomic Epidemiology of SARS-CoV-2 in Pakistan.

Shuhui Song, Cuiping Li, Lu Kang, Dongmei Tian, Nazish Badar, Wentai Ma, Shilei Zhao, Xuan Jiang, Chun Wang, Yongqiao Sun, Wenjie Li, Meng Lei, Shuangli Li, Qiuhui Qi, Aamer Ikram, Muhammad Salman, Massab Umair, Huma Shireen, Fatima Batool, Bing Zhang, Hua Chen, Yun-Gui Yang, Amir Ali Abbasi, Mingkun Li, Yongbiao Xue, Yiming Bao

Genom. Proteom. Bioinform., 2021

Genome Warehouse: A Public Repository Housing Genome-scale Data.

Meili Chen, Yingke Ma, Song Wu, Xinchang Zheng, Hongen Kang, Jian Sang, Xingjian Xu, Lili Hao, Zhaohua Li, Zheng Gong, Jing-Fa Xiao, Zhang Zhang, Wenming Zhao, Yiming Bao

Genom. Proteom. Bioinform., 2021

The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types.

Tingting Chen, Xu Chen, Sisi Zhang, Junwei Zhu, Bixia Tang, Anke Wang, Lili Dong, Zhewen Zhang, Caixia Yu, Yanling Sun, Lianjiang Chi, Huanxin Chen, Shuang Zhai, Yubin Sun, Li Lan, Xin Zhang, Jing-Fa Xiao, Yiming Bao, Zhang Zhang, Wenming Zhao

Genom. Proteom. Bioinform., 2021

Self-Adaptive Transfer Learning for Multicenter Glaucoma Classification in Fundus Retina Images.

Yiming Bao, Jun Wang, Tong Li, Linyan Wang, Jianwei Xu, Juan Ye, Dahong Qian

CoRR, 2021

A real-time system using deep learning to detect and track ureteral orifices during urinary endoscopy.

Dingyi Liu, Xin Peng, Xiaoqing Liu, Yiming Li, Yiming Bao, Jianwei Xu, Xianzhang Bian, Wei Xue, Dahong Qian

Comput. Biol. Medicine, 2021

Self-adaptive Transfer Learning for Multicenter Glaucoma Classification in Fundus Retina Images.

Yiming Bao, Jun Wang, Tong Li, Linyan Wang, Jianwei Xu, Juan Ye, Dahong Qian

Proceedings of the Ophthalmic Medical Image Analysis - 8th International Workshop, 2021

C3D-UNET: A Comprehensive 3D Unet for Covid-19 Segmentation with Intact Encoding and Local Attention.

Yiming Bao, Hexiang Zeng, Chengfeng Zhou, Chen Liu, Lichi Zhang, Dahong Qian, Jun Wang, Hongbing Lu

Proceedings of the 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2021

2020

Prior-Attention Residual Learning for More Discriminative COVID-19 Screening in CT Images.

Jun Wang, Yiming Bao, Yaofeng Wen, Hongbing Lu, Hu Luo, Yunfei Xiang, Xiaoming Li, Chen Liu, Dahong Qian

IEEE Trans. Medical Imaging, 2020

EWAS Data Hub: a resource of DNA methylation array data and metadata.

Zhuang Xiong, Mengwei Li, Fei Yang, Yingke Ma, Jian Sang, Rujiao Li, Zhaohua Li, Zhang Zhang, Yiming Bao

Nucleic Acids Res., 2020

The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR.

Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Jing-Fa Xiao, Zhang Zhang, Wenming Zhao, Yongbiao Xue, Yiming Bao

Genom. Proteom. Bioinform., 2020

Population Genetics of SARS-CoV-2: Disentangling Effects of Sampling Bias and Infection Clusters.

Qi Liu, Shilei Zhao, Chengmin Shi, Shuhui Song, Sihui Zhu, Yankai Su, Wenming Zhao, Mingkun Li, Yiming Bao, Yongbiao Xue, Hua Chen

Genom. Proteom. Bioinform., 2020

The Elements of Data Sharing.

Zhang Zhang, Shuhui Song, Jun Yu, Wenming Zhao, Jing-Fa Xiao, Yiming Bao

Genom. Proteom. Bioinform., 2020

2019

NucMap: a database of genome-wide nucleosome positioning map across species.

Yongbing Zhao, Jinyue Wang, Fang Liang, Yanxia Liu, Qi Wang, Hao Zhang, Meiye Jiang, Zhewen Zhang, Wenming Zhao, Yiming Bao, Zhang Zhang, Jiayan Wu, Yan W. Asmann, Rujiao Li, Jing-Fa Xiao

Nucleic Acids Res., 2019

iDog: an integrated resource for domestic dogs and wild canids.

Bixia Tang, Qing Zhou, Lili Dong, Wulue Li, Xiangquan Zhang, Li Lan, Shuang Zhai, Jing-Fa Xiao, Zhang Zhang, Yiming Bao, Ya-Ping Zhang, Guo-Dong Wang, Wenming Zhao

Nucleic Acids Res., 2019

EWAS Atlas: a curated knowledgebase of epigenome-wide association studies.

Mengwei Li, Dong Zou, Zhaohua Li, Ran Gao, Jian Sang, Yuansheng Zhang, Rujiao Li, Lin Xia, Tao Zhang, Guangyi Niu, Yiming Bao, Zhang Zhang

Nucleic Acids Res., 2019

Characterization and identification of long non-coding RNAs based on feature relationship.

Guangyu Wang, Hongyan Yin, Boyang Li, Chunlei Yu, Fan Wang, Xingjian Xu, Jiabao Cao, Yiming Bao, Liguo Wang, Amir Ali Abbasi, Vladimir B. Bajic, Lina Ma, Zhang Zhang

Bioinform., 2019

2018

Genome Variation Map: a data repository of genome variations in BIG Data Center.

Shuhui Song, Dongmei Tian, Cuiping Li, Bixia Tang, Lili Dong, Jing-Fa Xiao, Yiming Bao, Wenming Zhao, Hang He, Zhang Zhang

Nucleic Acids Res., 2018

ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization.

Jian Sang, Zhennan Wang, Man Li, Jiabao Cao, Guangyi Niu, Lin Xia, Dong Zou, Fan Wang, Xingjian Xu, Xiaojiao Han, Jinqi Fan, Ye Yang, Wanzhu Zuo, Yang Zhang, Wenming Zhao, Yiming Bao, Jing-Fa Xiao, Songnian Hu, Lili Hao, Zhang Zhang

Nucleic Acids Res., 2018

MethBank 3.0: a database of DNA methylomes across a variety of species.

Rujiao Li, Fang Liang, Mengwei Li, Dong Zou, Shixiang Sun, Yongbing Zhao, Wenming Zhao, Yiming Bao, Jing-Fa Xiao, Zhang Zhang

Nucleic Acids Res., 2018

2017

Virus Variation Resource - improved response to emergent viral outbreaks.

Eneida Hatcher, Sergey A. Zhdanov, Yiming Bao, Olga Blinkova, Eric P. Nawrocki, Yuri Ostapchuck, Alejandro A. Schäffer, J. Rodney Brister

Nucleic Acids Res., 2017

2016

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.

Nuala A. O'Leary, Mathew W. Wright, J. Rodney Brister, Stacy Ciufo, Diana Haddad, Richard McVeigh, Bhanu Rajput, Barbara Robbertse, Brian Smith-White, Danso Ako-Adjei, Alexander Astashyn, Azat Badretdin, Yiming Bao, Olga Blinkova, Vyacheslav Brover, Vyacheslav Chetvernin, Jinna Choi, Eric Cox, Olga D. Ermolaeva, Catherine M. Farrell, Tamara Goldfarb, Tripti Gupta, Daniel H. Haft, Eneida Hatcher, Wratko Hlavina, Vinita S. Joardar, Vamsi K. Kodali, Wenjun Li, Donna R. Maglott, Patrick Masterson, Kelly M. McGarvey, Michael R. Murphy, Kathleen O'Neill, Shashikant Pujar, Sanjida H. Rangwala, Daniel Rausch, Lillian D. Riddick, Conrad L. Schoch, Andrei Shkeda, Susan S. Storz, Hanzhen Sun, Françoise Thibaud-Nissen, Igor Tolstoy, Raymond E. Tully, Anjana R. Vatsan, Craig Wallin, David Webb, Wendy Wu, Melissa J. Landrum, Avi Kimchi, Tatiana A. Tatusova, Michael DiCuccio, Paul A. Kitts, Terence D. Murphy, Kim D. Pruitt

Nucleic Acids Res., 2016

2015

NCBI Viral Genomes Resource.

J. Rodney Brister, Danso Ako-Adjei, Yiming Bao, Olga Blinkova

Nucleic Acids Res., 2015

2014

Virus Variation Resource - recent updates and future directions.

J. Rodney Brister, Yiming Bao, Sergey A. Zhdanov, Yuri Ostapchuck, Vyacheslav Chetvernin, Boris Kiryutin, Leonid Zaslavsky, Michael Kimelman, Tatiana A. Tatusova

Nucleic Acids Res., 2014

2008

Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation.

Leonid Zaslavsky, Yiming Bao, Tatiana A. Tatusova

BMC Bioinform., 2008

2007

FLAN: a web server for influenza virus genome annotation.

Yiming Bao, Pavel Bolotov, Dmitry Dernovoy, Boris Kiryutin, Tatiana A. Tatusova

Nucleic Acids Res., 2007

An Adaptive Resolution Tree Visualization of Large Influenza Virus Sequence Datasets.

Leonid Zaslavsky, Yiming Bao, Tatiana A. Tatusova

Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007