Raquel Cardoso de Melo Minardi

Orcid: 0000-0001-5190-100X

Affiliations:
  • Federal University of Minas Gerais, Department of Computer Science


According to our database1, Raquel Cardoso de Melo Minardi authored at least 43 papers between 2003 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Know-how of holding a Bioinformatics competition: Structure, model, overview, and perspectives.
PLoS Comput. Biol., December, 2023

Propedia v2.3: A novel representation approach for the peptide-protein interaction database using graph-based structural signatures.
Frontiers Bioinform., May, 2023

Editorial: Bioinformatics in the age of data science: algorithms, methods, and tools applied from Omics to structural data.
Frontiers Bioinform., May, 2023

Peptide-Protein Interface Classification Using Convolutional Neural Networks.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2023

Using Natural Language Processing for Context Identification in COVID-19 Literature.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2023

2022
GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs.
Nucleic Acids Res., 2022

Prioritizing Virtual Screening with Interpretable Interaction Fingerprints.
J. Chem. Inf. Model., 2022

Protein structural bioinformatics: An overview.
Comput. Biol. Medicine, 2022

Identifying Large Scale Conformational Changes in Proteins Through Distance Maps and Convolutional Networks.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2022

Computational Methodology for Discovery of Potential Inhibitory Peptides.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2022

2021
From In-Person to the Online World: Insights Into Organizing Events in Bioinformatics.
Frontiers Bioinform., 2021

VTR: A Web Tool for Identifying Analogous Contacts on Protein Structures and Their Complexes.
Frontiers Bioinform., 2021

Propedia: a database for protein-peptide identification based on a hybrid clustering algorithm.
BMC Bioinform., 2021

2020
nAPOLI: A Graph-Based Strategy to Detect and Visualize Conserved Protein-Ligand Interactions in Large-Scale.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Proteus: An algorithm for proposing stabilizing mutation pairs based on interactions observed in known protein 3D structures.
BMC Bioinform., 2020

A Brief History of Bioinformatics Told by Data Visualization.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2020

2019
Proteingo: Motivation, user experience, and learning of molecular interactions in biological complexes.
Entertain. Comput., 2019

Protein Structural Signatures Revisited: Geometric Linearity of Main Chains are More Relevant to Classification Performance than Packing of Residues.
Proceedings of the Bioinformatics and Biomedical Engineering, 2019

2018
How to compute protein residue contacts more accurately?
Proceedings of the 33rd Annual ACM Symposium on Applied Computing, 2018

An Interactive Strategy to Visualize Common Subgraphs in Protein-Ligand Interaction.
Proceedings of the Bioinformatics and Biomedical Engineering, 2018

2017
Vermont: a multi-perspective visual interactive platform for mutational analysis.
BMC Bioinform., 2017

Portinari: A Data Exploration Tool to Personalize Cervical Cancer Screening.
Proceedings of the 39th IEEE/ACM International Conference on Software Engineering: Software Engineering in Society Track, 2017

Experimental Evaluation of Crowdsourcing on the Characterization of Data Visualization Techniques.
Proceedings of the 2017 Brazilian Conference on Intelligent Systems, 2017

CALI: A Novel Visual Model for Frequent Pattern Mining in Protein-Ligand Graphs.
Proceedings of the 17th IEEE International Conference on Bioinformatics and Bioengineering, 2017

2016
Isofunctional Protein Subfamily Detection Using Data Integration and Spectral Clustering.
PLoS Comput. Biol., 2016

Emotional Fingerprint from Authors in Classical Literature.
Proceedings of the 22nd Brazilian Symposium on Multimedia and the Web, 2016

GReMLIN: A Graph Mining Strategy to Infer Protein-Ligand Interaction Patterns.
Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, 2016

2015
GASS: identifying enzyme active sites with genetic algorithms.
Bioinform., 2015

PDBest: a user-friendly platform for manipulating and enhancing protein structures.
Bioinform., 2015

2014
Uma investigação sobre as técnicas de visualização de informação quantitativas e qualitativas.
Proceedings of the 13th Brazilian Symposium on Human Factors in Computing Systems, 2014

2013
aCSM: noise-free graph-based signatures to large-scale receptor-based ligand prediction.
Bioinform., 2013

uTrack: track yourself! monitoring information on online social media.
Proceedings of the 22nd International World Wide Web Conference, 2013

2012
FPCluster: An Efficient Out-of-core Clustering Strategy without a Similarity Metric.
J. Inf. Data Manag., 2012

HydroPaCe: understanding and predicting cross-inhibition in serine proteases through hydrophobic patch centroids.
Bioinform., 2012

Combining traditional and high-density visualizations in a dashboard to network health monitoring.
Proceedings of the 7th IEEE Conference on Visual Analytics Science and Technology, 2012

ADVISe: Visualizing the dynamics of enzyme annotations in UniProt/Swiss-Prot.
Proceedings of the 2012 IEEE Symposium on Biological Data Visualization, 2012

2011
Data Integration via Constrained Clustering: An Application to Enzyme Clustering.
Proceedings of the Eleventh SIAM International Conference on Data Mining, 2011

FPCluster: Uma estratégia eficiente de agrupamento out-of-core sem medida de similaridade.
Proceedings of the XXVI Simpósio Brasileiro de Banco de Dados, 2011

GreenWiki: a tool to support users' assessment of the quality of Wikipedia articles.
Proceedings of the 2011 Joint International Conference on Digital Libraries, 2011

2010
Identification of subfamily-specific sites based on active sites modeling and clustering.
Bioinform., 2010

2004
Dynamic Content Placement for Mobile Content Distribution Networks.
Proceedings of the Web Content Caching and Distribution: 9th International Workshop, 2004

An Image-Matching Approach to Protein Similarity Analysis.
Proceedings of the XVII Brazilian Symposium on Computer Graphics and Image Processing, 2004

2003
Using Structural Signatures for Identifying Globins: the Intra-Subunit Electrostatic Interactions.
Proceedings of the II Brazilian Workshop on Bioinformatics, 2003


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