Rob Egan

According to our database, Rob Egan authored at least 12 papers between 2013 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Designing Efficient SIMD Kernels for High Performance Sequence Alignment.

Doru-Thom Popovici, Muaaz Gul Awan, Giulia Guidi, Rob Egan, Steven A. Hofmeyr, Leonid Oliker, Katherine A. Yelick

Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2023

2022

Persistent memory as an effective alternative to random access memory in metagenome assembly.

Jingchao Sun, Zhining Qiu, Rob Egan, Harrison Ho, Yue Li, Zhong Wang

BMC Bioinform., 2022

2021

Accelerating large scale <i>de novo</i> metagenome assembly using GPUs.

Muaaz Gul Awan, Steven A. Hofmeyr, Rob Egan, Nan Ding, Aydin Buluç, Jack Deslippe, Leonid Oliker, Katherine A. Yelick

Proceedings of the International Conference for High Performance Computing, 2021

2020

The Parallelism Motifs of Genomic Data Analysis.

Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker

CoRR, 2020

2019

De novo Nanopore read quality improvement using deep learning.

Nathan LaPierre, Rob Egan, Wei Wang, Zhong Wang

BMC Bioinform., 2019

2018

Extreme scale de novo metagenome assembly.

Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick

Proceedings of the International Conference for High Performance Computing, 2018

2017

Extreme-Scale De Novo Genome Assembly.

Evangelos Georganas, Steven A. Hofmeyr, Rob Egan, Aydin Buluç, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick

CoRR, 2017

MerBench: PGAS Benchmarks for High Performance Genome Assembly.

Evangelos Georganas, Marquita Ellis, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick

Proceedings of PAW@SC 2017: Second Annual PGAS Applications Workshop, 2017

Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems.

Marquita Ellis, Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick

Proceedings of the Euro-Par 2017: Parallel Processing - 23rd International Conference on Parallel and Distributed Computing, Santiago de Compostela, Spain, August 28, 2017

2015

HipMer: an extreme-scale de novo genome assembler.

Evangelos Georganas, Aydin Buluç, Jarrod Chapman, Steven A. Hofmeyr, Chaitanya Aluru, Rob Egan, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick

Proceedings of the International Conference for High Performance Computing, 2015

2013

ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies.

Scott C. Clark, Rob Egan, Peter I. Frazier, Zhong Wang

Bioinform., 2013

Automatic Outlier Detection for Genome Assembly Quality Assessment.

Taghrid Samak, Rob Egan, Brian Bushnell, Daniel K. Gunter, Alex Copeland, Zhong Wang

Proceedings of the 9th IEEE International Conference on eScience, 2013