Saliya Ekanayake

According to our database, Saliya Ekanayake authored at least 27 papers between 2010 and 2022.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2022

Stochastic gradient descent-based support vector machines training optimization on Big Data and HPC frameworks.

Vibhatha Abeykoon, Geoffrey C. Fox, Minje Kim, Saliya Ekanayake, Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, Niranda Perera, Chathura Widanage, Ahmet Uyar, Gurhan Gunduz, Selahatin Akkas

Concurr. Comput. Pract. Exp., 2022

Extreme-Scale Many-against-Many Protein Similarity Search.

Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç

Proceedings of the SC22: International Conference for High Performance Computing, 2022

2021

Parallel Algorithms for Densest Subgraph Discovery Using Shared Memory Model.

B. D. M. De Zoysa, Y. A. M. M. A. Ali, M. D. I. Maduranga, Indika Perera, Saliya Ekanayake, Anil Vullikanti

CoRR, 2021

2020

Networked experiments and modeling for producing collective identity in a group of human subjects using an iterative abduction framework.

Vanessa Cedeno-Mieles, Zhihao Hu, Yihui Ren, Xinwei Deng, Abhijin Adiga, Christopher L. Barrett, Noshir Contractor, Saliya Ekanayake, Joshua M. Epstein, Brian J. Goode, Gizem Korkmaz, Chris J. Kuhlman, Dustin Machi, Michael W. Macy, Madhav V. Marathe, Naren Ramakrishnan, S. S. Ravi, Parang Saraf, Nathan Self

Soc. Netw. Anal. Min., 2020

The Parallelism Motifs of Genomic Data Analysis.

Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker

CoRR, 2020

Distributed many-to-many protein sequence alignment using sparse matrices.

Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, Aydin Buluç

Proceedings of the International Conference for High Performance Computing, 2020

2019

MIDAS: Multilinear detection at scale.

Saliya Ekanayake, Jose Cadena, Udayanga Wickramasinghe, Anil Vullikanti

J. Parallel Distributed Comput., 2019

On the Modeling and Agent-Based Simulation of a Cooperative Group Anagram Game.

Zhihao Hu, Dustin Machi, Madhav V. Marathe, S. S. Ravi, Yihui Ren, Vanessa Cedeno-Mieles, Saliya Ekanayake, Xinwei Deng, Brian J. Goode, Naren Ramakrishnan, Parang Saraf, Nathan Self, Abhijin Adiga, Gizem Korkmaz, Chris J. Kuhlman

Proceedings of the 2019 Winter Simulation Conference, 2019

RDMA Managed Buffers: A Case for Accelerating Communication Bound Processes via Fine-Grained Events for Zero-Copy Message Passing.

Udayanga Wickramasinghe, Andrew Lumsdaine, Saliya Ekanayake, Martin Swany

Proceedings of the 18th International Symposium on Parallel and Distributed Computing, 2019

The Matrix: An Agent-Based Modeling Framework for Data Intensive Simulations.

Parantapa Bhattacharya, Saliya Ekanayake, Chris J. Kuhlman, Christian Lebiere, Don Morrison, Samarth Swarup, Mandy L. Wilson, Mark G. Orr

Proceedings of the 18th International Conference on Autonomous Agents and MultiAgent Systems, 2019

Mechanistic and data-driven agent-based models to explain human behavior in online networked group anagram games.

Vanessa Cedeno-Mieles, Zhihao Hu, Xinwei Deng, Yihui Ren, Abhijin Adiga, Christopher L. Barrett, Saliya Ekanayake, Gizem Korkmaz, Chris J. Kuhlman, Dustin Machi, Madhav V. Marathe, S. S. Ravi, Brian J. Goode, Naren Ramakrishnan, Parang Saraf, Nathan Self, Noshir Contractor, Joshua M. Epstein, Michael W. Macy

Proceedings of the ASONAM '19: International Conference on Advances in Social Networks Analysis and Mining, 2019

2018

Anatomy of machine learning algorithm implementations in MPI, Spark, and Flink.

Supun Kamburugamuve, Pulasthi Wickramasinghe, Saliya Ekanayake, Geoffrey C. Fox

Int. J. High Perform. Comput. Appl., 2018

Pipelines and their Compositions for Modeling and Analysis of controlled Online Networked Social Science Experiments.

Vanessa Cedeno-Mieles, Yihui Ren, Saliya Ekanayake, Brian J. Goode, Chris J. Kuhlman, Dustin Machi, Madhav V. Marathe, Henning S. Mortveit, Zhihao Hu, Xinwei Deng, Naren Ramakrishnan, Parang Saraf, Nathan Self, Noshir Contractor, Joshua M. Epstein, Michael W. Macy

Proceedings of the 2018 Winter Simulation Conference, 2018

Generative Modeling of Human Behavior and Social Interactions Using Abductive Analysis.

Yihui Ren, Vanessa Cedeno-Mieles, Zhihao Hu, Xinwei Deng, Abhijin Adiga, Christopher L. Barrett, Saliya Ekanayake, Brian J. Goode, Gizem Korkmaz, Chris J. Kuhlman, Dustin Machi, Madhav V. Marathe, Naren Ramakrishnan, S. S. Ravi, Parang Saraf, Nathan Self, Noshir Contractor, Joshua M. Epstein, Michael W. Macy

Proceedings of the IEEE/ACM 2018 International Conference on Advances in Social Networks Analysis and Mining, 2018

2017

Fast graph scan statistics optimization using algebraic fingerprints.

Jose Cadena, Saliya Ekanayake, Anil Vullikanti

Proceedings of the 2017 IEEE International Conference on Big Data (IEEE BigData 2017), 2017

2016

SPIDAL Java: high performance data analytics with Java and MPI on large multicore HPC clusters.

Saliya Ekanayake, Supun Kamburugamuve, Geoffrey C. Fox

Proceedings of the 24th High Performance Computing Symposium, 2016

Towards High Performance Processing of Streaming Data in Large Data Centers.

Supun Kamburugamuve, Saliya Ekanayake, Milinda Pathirage, Geoffrey C. Fox

Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

TSmap3D: Browser visualization of high dimensional time series data.

Supun Kamburugamuve, Pulasthi Wickramasinghe, Saliya Ekanayake, Chathuri Wimalasena, Milinda Pathirage, Geoffrey C. Fox

Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016

Java thread and process performance for parallel machine learning on multicore HPC clusters.

Saliya Ekanayake, Supun Kamburugamuve, Pulasthi Wickramasinghe, Geoffrey C. Fox

Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016

2015

Big Data, Simulations and HPC Convergence.

Geoffrey C. Fox, Judy Qiu, Shantenu Jha, Saliya Ekanayake, Supun Kamburugamuve

Proceedings of the Big Data Benchmarking, 2015

2014

Visualizing the Protein Sequence Universe.

Larissa Stanberry, Roger Higdon, Winston Haynes, Natali Kolker, William Broomall, Saliya Ekanayake, Adam Hughes, Yang Ruan, Judy Qiu, Eugene Kolker, Geoffrey C. Fox

Concurr. Comput. Pract. Exp., 2014

Towards a Comprehensive Set of Big Data Benchmarks.

Geoffrey C. Fox, Shantenu Jha, Judy Qiu, Saliya Ekanayake, André Luckow

Proceedings of the Big Data and High Performance Computing, 2014

Integration of Clustering and Multidimensional Scaling to Determine Phylogenetic Trees as Spherical Phylograms Visualized in 3 Dimensions.

Yang Ruan, Geoffrey L. House, Saliya Ekanayake, Ursel Schutte, James D. Bever, Haixu Tang, Geoffrey C. Fox

Proceedings of the 14th IEEE/ACM International Symposium on Cluster, 2014

2012

Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets.

Adam Hughes, Yang Ruan, Saliya Ekanayake, Seung-Hee Bae, Qunfeng Dong, Mina Rho, Judy Qiu, Geoffrey C. Fox

BMC Bioinform., 2012

DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences.

Yang Ruan, Saliya Ekanayake, Mina Rho, Haixu Tang, Seung-Hee Bae, Judy Qiu, Geoffrey C. Fox

Proceedings of the ACM International Conference on Bioinformatics, 2012

2010

Hybrid cloud and cluster computing paradigms for life science applications.

Judy Qiu, Jaliya Ekanayake, Thilina Gunarathne, Jong Youl Choi, Seung-Hee Bae, Hui Li, Bingjing Zhang, Tak-Lon Wu, Yang Ruan, Saliya Ekanayake, Adam Hughes, Geoffrey C. Fox

BMC Bioinform., 2010

Performance of Windows Multicore Systems on Threading and MPI.

Judy Qiu, Scott Beason, Seung-Hee Bae, Saliya Ekanayake, Geoffrey C. Fox

Proceedings of the 10th IEEE/ACM International Conference on Cluster, 2010