Marquita Ellis

Orcid: 0000-0002-4158-9101

Affiliations:
  • IBM Thomas J. Watson Research Center, Yorktown Heights, NY, USA
  • University of California, Berkeley, CA, USA (Ph.D., 2020)


According to our database1, Marquita Ellis authored at least 14 papers between 2017 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

Online presence:

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Bibliography

2024
Automated Data Management and Learning-Based Scheduling for Ray-Based Hybrid HPC-Cloud Systems.
Proceedings of the Euro-Par 2024: Parallel Processing, 2024

2023
Cloud-Bursting and Autoscaling for Python-Native Scientific Workflows Using Ray.
Proceedings of the High Performance Computing, 2023

2021
10 Years Later: Cloud Computing is Closing the Performance Gap.
Proceedings of the ICPE '21: ACM/SPEC International Conference on Performance Engineering, 2021

Asynchrony versus bulk-synchrony for a generalized N-body problem from genomics.
Proceedings of the PPoPP '21: 26th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2021

Distributed-Memory k-mer Counting on GPUs.
Proceedings of the 35th IEEE International Parallel and Distributed Processing Symposium, 2021

Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly.
Proceedings of the 35th IEEE International Parallel and Distributed Processing Symposium, 2021

Scaling Generalized N-Body Problems, A Case Study from Genomics.
Proceedings of the ICPP 2021: 50th International Conference on Parallel Processing, Lemont, IL, USA, August 9, 2021

BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper.
Proceedings of the 2021 SIAM Conference on Applied and Computational Discrete Algorithms, 2021

2020
Parallelizing Irregular Applications for Distributed Memory Scalability: Case Studies from Genomics.
PhD thesis, 2020

The Parallelism Motifs of Genomic Data Analysis.
CoRR, 2020

LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment.
Proceedings of the 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2020

2019
diBELLA: Distributed Long Read to Long Read Alignment.
Proceedings of the 48th International Conference on Parallel Processing, 2019

2017
MerBench: PGAS Benchmarks for High Performance Genome Assembly.
Proceedings of PAW@SC 2017: Second Annual PGAS Applications Workshop, 2017

Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems.
Proceedings of the Euro-Par 2017: Parallel Processing - 23rd International Conference on Parallel and Distributed Computing, Santiago de Compostela, Spain, August 28, 2017


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