Marquita Ellis

According to our database, Marquita Ellis authored at least 13 papers between 2017 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Cloud-Bursting and Autoscaling for Python-Native Scientific Workflows Using Ray.

Tingkai Liu, Marquita Ellis, Carlos H. A. Costa, Claudia Misale, Sara Kokkila Schumacher, Jinwook Jung, Gi-Joon Nam, Volodymyr V. Kindratenko

Proceedings of the High Performance Computing, 2023

2021

10 Years Later: Cloud Computing is Closing the Performance Gap.

Giulia Guidi, Marquita Ellis, Aydin Buluç, Katherine A. Yelick, David E. Culler

Proceedings of the ICPE '21: ACM/SPEC International Conference on Performance Engineering, 2021

Asynchrony versus bulk-synchrony for a generalized N-body problem from genomics.

Marquita Ellis, Aydin Buluç, Katherine A. Yelick

Proceedings of the PPoPP '21: 26th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2021

Distributed-Memory k-mer Counting on GPUs.

Israt Nisa, Prashant Pandey, Marquita Ellis, Leonid Oliker, Aydin Buluç, Katherine A. Yelick

Proceedings of the 35th IEEE International Parallel and Distributed Processing Symposium, 2021

Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly.

Giulia Guidi, Oguz Selvitopi, Marquita Ellis, Leonid Oliker, Katherine A. Yelick, Aydin Buluç

Proceedings of the 35th IEEE International Parallel and Distributed Processing Symposium, 2021

Scaling Generalized N-Body Problems, A Case Study from Genomics.

Marquita Ellis, Aydin Buluç, Katherine A. Yelick

Proceedings of the ICPP 2021: 50th International Conference on Parallel Processing, Lemont, IL, USA, August 9, 2021

BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper.

Giulia Guidi, Marquita Ellis, Daniel Rokhsar, Katherine A. Yelick, Aydin Buluç

Proceedings of the 2021 SIAM Conference on Applied and Computational Discrete Algorithms, 2021

2020

Parallelizing Irregular Applications for Distributed Memory Scalability: Case Studies from Genomics.

Marquita May Ellis

PhD thesis, 2020

The Parallelism Motifs of Genomic Data Analysis.

Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker

CoRR, 2020

LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment.

Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick

Proceedings of the 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2020

2019

diBELLA: Distributed Long Read to Long Read Alignment.

Marquita Ellis, Giulia Guidi, Aydin Buluç, Leonid Oliker, Katherine A. Yelick

Proceedings of the 48th International Conference on Parallel Processing, 2019

2017

MerBench: PGAS Benchmarks for High Performance Genome Assembly.

Evangelos Georganas, Marquita Ellis, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick

Proceedings of PAW@SC 2017: Second Annual PGAS Applications Workshop, 2017

Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems.

Marquita Ellis, Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick

Proceedings of the Euro-Par 2017: Parallel Processing - 23rd International Conference on Parallel and Distributed Computing, Santiago de Compostela, Spain, August 28, 2017