Robert P. Sheridan

Orcid: 0000-0002-6549-1635

According to our database1, Robert P. Sheridan authored at least 56 papers between 1987 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

Online presence:

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Bibliography

2023
Development and Evaluation of Conformal Prediction Methods for QSAR.
CoRR, 2023

2022
Prediction Accuracy of Production ADMET Models as a Function of Version: Activity Cliffs Rule.
J. Chem. Inf. Model., 2022

Stability of Prediction in Production ADMET Models as a Function of Version: Why and When Predictions Change.
J. Chem. Inf. Model., 2022

2021
Light Gradient Boosting Machine as a Regression Method for Quantitative Structure-Activity Relationships.
CoRR, 2021

2020
Deep Dive into Machine Learning Models for Protein Engineering.
J. Chem. Inf. Model., 2020

Correction to Extreme Gradient Boosting as a Method for Quantitative Structure-Activity Relationships.
J. Chem. Inf. Model., 2020

Experimental Error, Kurtosis, Activity Cliffs, and Methodology: What Limits the Predictivity of Quantitative Structure-Activity Relationship Models?
J. Chem. Inf. Model., 2020

Nearest Neighbor Gaussian Process for Quantitative Structure-Activity Relationships.
J. Chem. Inf. Model., 2020

AlignmentViewer: Sequence Analysis of Large Protein Families.
F1000Research, 2020

2019
Interpretation of QSAR Models by Coloring Atoms According to Changes in Predicted Activity: How Robust Is It?
J. Chem. Inf. Model., 2019

Building Quantitative Structure-Activity Relationship Models Using Bayesian Additive Regression Trees.
J. Chem. Inf. Model., 2019

Step Change Improvement in ADMET Prediction with PotentialNet Deep Featurization.
CoRR, 2019

The EVcouplings Python framework for coevolutionary sequence analysis.
Bioinform., 2019

2017
Demystifying Multitask Deep Neural Networks for Quantitative Structure-Activity Relationships.
J. Chem. Inf. Model., October, 2017

Is Multitask Deep Learning Practical for Pharma?
J. Chem. Inf. Model., August, 2017

2016
Extreme Gradient Boosting as a Method for Quantitative Structure-Activity Relationships.
J. Chem. Inf. Model., 2016

Debunking the Idea that Ligand Efficiency Indices Are Superior to pIC50 as QSAR Activities.
J. Chem. Inf. Model., 2016

2015
eCounterscreening: Using QSAR Predictions to Prioritize Testing for Off-Target Activities and Setting the Balance between Benefit and Risk.
J. Chem. Inf. Model., 2015

The Relative Importance of Domain Applicability Metrics for Estimating Prediction Errors in QSAR Varies with Training Set Diversity.
J. Chem. Inf. Model., 2015

Deep Neural Nets as a Method for Quantitative Structure-Activity Relationships.
J. Chem. Inf. Model., 2015

2014
Modeling a Crowdsourced Definition of Molecular Complexity.
J. Chem. Inf. Model., 2014

Global Quantitative Structure-Activity Relationship Models vs Selected Local Models as Predictors of Off-Target Activities for Project Compounds.
J. Chem. Inf. Model., 2014

2013
Using Random Forest To Model the Domain Applicability of Another Random Forest Model.
J. Chem. Inf. Model., 2013

Time-Split Cross-Validation as a Method for Estimating the Goodness of Prospective Prediction.
J. Chem. Inf. Model., 2013

2012
Three Useful Dimensions for Domain Applicability in QSAR Models Using Random Forest.
J. Chem. Inf. Model., 2012

Comparison of Random Forest and Pipeline Pilot Naïve Bayes in Prospective QSAR Predictions.
J. Chem. Inf. Model., 2012

2011
3D Protein Structure Predicted from Sequence
CoRR, 2011

2010
Drug-like Density: A Method of Quantifying the "Bindability" of a Protein Target Based on a Very Large Set of Pockets and Drug-like Ligands from the Protein Data Bank.
J. Chem. Inf. Model., 2010

2009
Generating hypotheses about molecular structure-activity relationships (SARs) by solving an optimization problem.
Stat. Anal. Data Min., 2009

QSAR Models for Predicting the Similarity in Binding Profiles for Pairs of Protein Kinases and the Variation of Models between Experimental Data Sets.
J. Chem. Inf. Model., 2009

2008
Alternative Global Goodness Metrics and Sensitivity Analysis: Heuristics to Check the Robustness of Conclusions from Studies Comparing Virtual Screening Methods.
J. Chem. Inf. Model., 2008

Multiple protein structures and multiple ligands: effects on the apparent goodness of virtual screening results.
J. Comput. Aided Mol. Des., 2008

2007
Computational Analysis of Mouse piRNA Sequence and Biogenesis.
PLoS Comput. Biol., 2007

Comparison of Topological, Shape, and Docking Methods in Virtual Screening.
J. Chem. Inf. Model., 2007

2006
Molecular Transformations as a Way of Finding and Exploiting Consistent Local QSAR.
J. Chem. Inf. Model., 2006

2005
Boosting: An Ensemble Learning Tool for Compound Classification and QSAR Modeling.
J. Chem. Inf. Model., 2005

Reagent Selector: Using Synthon Analysis to Visualize Reagent Properties and Assist in Combinatorial Library Design.
J. Chem. Inf. Model., 2005

Enhanced Virtual Screening by Combined Use of Two Docking Methods: Getting the Most on a Limited Budget.
J. Chem. Inf. Model., 2005

2004
Calculating Similarities between Biological Activities in the MDL Drug Data Report Database.
J. Chem. Inf. Model., 2004

Similarity to Molecules in the Training Set Is a Good Discriminator for Prediction Accuracy in QSAR.
J. Chem. Inf. Model., 2004

2003
Random Forest: A Classification and Regression Tool for Compound Classification and QSAR Modeling.
J. Chem. Inf. Comput. Sci., 2003

Finding Multiactivity Substructures by Mining Databases of Drug-Like Compounds.
J. Chem. Inf. Comput. Sci., 2003

2002
The Most Common Chemical Replacements in Drug-Like Compounds.
J. Chem. Inf. Comput. Sci., 2002

2001
Protocols for Bridging the Peptide to Nonpeptide Gap in Topological Similarity Searches.
J. Chem. Inf. Comput. Sci., 2001

2000
The Centroid Approximation for Mixtures: Calculating Similarity and Deriving Structure-Activity Relationships.
J. Chem. Inf. Comput. Sci., 2000

1998
A Method for Visualizing Recurrent Topological Substructures in Sets of Active Molecules.
J. Chem. Inf. Comput. Sci., 1998

1996
Chemical Similarity Using Geometric Atom Pair Descriptors.
J. Chem. Inf. Comput. Sci., 1996

Chemical Similarity Using Physiochemical Property Descriptors.
J. Chem. Inf. Comput. Sci., 1996

1995
Using a Genetic Algorithm To Suggest Combinatorial Libraries.
J. Chem. Inf. Comput. Sci., 1995

1994
Extending the trend vector: The trend matrix and sample-based partial least squares.
J. Comput. Aided Mol. Des., 1994

FLOG: A system to select 'quasi-flexible' ligands complementary to a receptor of known three-dimensional structure.
J. Comput. Aided Mol. Des., 1994

Flexibases: A way to enhance the use of molecular docking methods.
J. Comput. Aided Mol. Des., 1994

1993
PATTY: A programmable atom type and language for automatic classification of atoms in molecular databases.
J. Chem. Inf. Comput. Sci., 1993

1989
3DSEARCH: a system for three-dimensional substructure searching.
J. Chem. Inf. Comput. Sci., 1989

Using CONCORD to construct a large database of three-dimensional coordinates from connection tables.
J. Chem. Inf. Comput. Sci., 1989

1987
Designing novel nicotinic agonists by searching a database of molecular shapes.
J. Comput. Aided Mol. Des., 1987


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