Shinichi Morishita

According to our database, Shinichi Morishita authored at least 66 papers between 1986 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Decomposing mosaic tandem repeats accurately from long reads.

Bansho Masutani, Riki Kawahara, Shinichi Morishita

Bioinform., April, 2023

2021

Investigating the mitochondrial genomic landscape of Arabidopsis thaliana by long-read sequencing.

Bansho Masutani, Shin-ichi Arimura, Shinichi Morishita

PLoS Comput. Biol., 2021

Finding long tandem repeats in long noisy reads.

Shinichi Morishita, Kazuki Ichikawa, Eugene W. Myers

Bioinform., 2021

2020

HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C.

Ryo Nakabayashi, Shinichi Morishita

Bioinform., 2020

2019

A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer.

Bansho Masutani, Shinichi Morishita

Bioinform., 2019

2016

AgIn: measuring the landscape of CpG methylation of individual repetitive elements.

Yuta Suzuki, Jonas Korlach, Stephen W. Turner, Tatsuya Tsukahara, Junko Taniguchi, Wei Qu, Kazuki Ichikawa, Jun Yoshimura, Hideaki Yurino, Yuji Takahashi, Jun Mitsui, Hiroyuki Ishiura, Shoji Tsuji, Hiroyuki Takeda, Shinichi Morishita

Bioinform., 2016

Preface.

Yadong Wang, Kevin Burrage, Yunlong Liu, Shinichi Morishita, Tianhai Tian, Qinghua Jiang, Jiangning Song, Guohua Wang, Qian Zhu, Xiaohua Tony Hu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

A linear time algorithm for detecting long genomic regions enriched with a specific combination of epigenetic states.

Kazuki Ichikawa, Shinichi Morishita

BMC Genom., 2015

2014

A Simple but Powerful Heuristic Methodfor Accelerating $k$ -Means Clusteringof Large-Scale Data in Life Science.

Kazuki Ichikawa, Shinichi Morishita

IEEE ACM Trans. Comput. Biol. Bioinform., 2014

Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing.

Koichiro Doi, Taku Monjo, Pham H. Hoang, Jun Yoshimura, Hideaki Yurino, Jun Mitsui, Hiroyuki Ishiura, Yuji Takahashi, Yaeko Ichikawa, Jun Goto, Shoji Tsuji, Shinichi Morishita

Bioinform., 2014

2011

Poster: Robust estimation of DNA methylation with local regression.

Atsushi Sasaki, Shinichi Morishita

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Invited: Searching massive epigenome data for evolutionarily conserved sequence motifs.

Shinichi Morishita

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2009

MachiBase: a <i>Drosophila melanogaster</i> 5'-end mRNA transcription database.

Budrul Ahsan, Taro L. Saito, Shin-ichi Hashimoto, Keigo Muramatsu, Manabu Tsuda, Atsushi Sasaki, Kouji Matsushima, Toshiro Aigaki, Shinichi Morishita

Nucleic Acids Res., 2009

siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect.

Yuki Naito, Jun Yoshimura, Shinichi Morishita, Kumiko Ui-Tei

BMC Bioinform., 2009

UTGB toolkit for personalized genome browsers.

Taro L. Saito, Jun Yoshimura, Shin Sasaki, Budrul Ahsan, Atsushi Sasaki, Reginaldo Kuroshu, Shinichi Morishita

Bioinform., 2009

2008

UTGB/medaka: genomic resource database for medaka biology.

Budrul Ahsan, Daisuke Kobayashi, Tomoyuki Yamada, Masahiro Kasahara, Shin Sasaki, Taro L. Saito, Yukinobu Nagayasu, Koichiro Doi, Yoichiro Nakatani, Wei Qu, Tomoko Jindo, Atsuko Shimada, Kiyoshi Naruse, Atsushi Toyoda, Yoko Kuroki, Asao Fujiyama, Takashi Sasaki, Atsushi Shimizu, Shuichi Asakawa, Nobuyoshi Shimizu, Shin-ichi Hashimoto, Jun Yang, Yongjun Lee, Kouji Matsushima, Sumio Sugano, Mitsuru Sakaizumi, Takanori Narita, Kazuko Ohishi, Shinobu Haga, Fumiko Ohta, Hisayo Nomoto, Keiko Nogata, Tomomi Morishita, Tomoko Endo, Tadasu Shin-I, Hiroyuki Takeda, Yuji Kohara, Shinichi Morishita

Nucleic Acids Res., 2008

Relational-style XML query.

Taro L. Saito, Shinichi Morishita

Proceedings of the ACM SIGMOD International Conference on Management of Data, 2008

2007

Efficient Integration of Structure Indexes of XML.

Taro L. Saito, Shinichi Morishita

Proceedings of the Advances in Databases: Concepts, 2007

2006

PrimerStation: a highly specific multiplex genomic PCR primer design server for the human genome.

Tomoyuki Yamada, Haruhiko Soma, Shinichi Morishita

Nucleic Acids Res., 2006

Amoeba Join: Overcoming Structural Fluctuations in XML Data.

Taro L. Saito, Shinichi Morishita

Proceedings of the Ninth International Workshop on the Web and Databases, 2006

2005

Data mining tools for the <i>Saccharomyces cerevisiae</i> morphological database.

Taro L. Saito, Jun Sese, Yoichiro Nakatani, Fumi Sano, Masashi Yukawa, Yoshikazu Ohya, Shinichi Morishita

Nucleic Acids Res., 2005

dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference.

Yuki Naito, Tomoyuki Yamada, Takahiro Matsumiya, Kumiko Ui-Tei, Kaoru Saigo, Shinichi Morishita

Nucleic Acids Res., 2005

5'SAGE: 5'-end Serial Analysis of Gene Expression database.

Yasuhiro Kasai, Shin-ichi Hashimoto, Tomoyuki Yamada, Jun Sese, Sumio Sugano, Kouji Matsushima, Shinichi Morishita

Nucleic Acids Res., 2005

Accelerated off-target search algorithm for siRNA.

Tomoyuki Yamada, Shinichi Morishita

Bioinform., 2005

2004

Report on BIOKDD04: workshop on data mining in Bioinformatics.

Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos

SIGKDD Explor., 2004

SCMD: Saccharomyces cerevisiae Morphological Database.

Taro L. Saito, Miwaka Ohtani, Hiroshi Sawai, Fumi Sano, Ayaka Saka, Daisuke Watanabe, Masashi Yukawa, Yoshikazu Ohya, Shinichi Morishita

Nucleic Acids Res., 2004

siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference.

Yuki Naito, Tomoyuki Yamada, Kumiko Ui-Tei, Shinichi Morishita, Kaoru Saigo

Nucleic Acids Res., 2004

Computing Highly Specific and Noise-tolerant Oligomers Efficiently.

Tomoyuki Yamada, Shinichi Morishita

J. Bioinform. Comput. Biol., 2004

Development of Image Processing Program for Yeast Cell Morphology.

Miwaka Ohtani, Ayaka Saka, Fumi Sano, Yoshikazu Ohya, Shinichi Morishita

J. Bioinform. Comput. Biol., 2004

Constrained clusters of gene expression profiles with pathological features.

Jun Sese, Yukinori Kurokawa, Morito Monden, Kikuya Kato, Shinichi Morishita

Bioinform., 2004

Itemset Classified Clustering.

Jun Sese, Shinichi Morishita

Proceedings of the Knowledge Discovery in Databases: PKDD 2004, 2004

Data Mining: The Next Generation.

Raghu Ramakrishnan, Rakesh Agrawal, Johann-Christoph Freytag, Toni Bollinger, Christopher W. Clifton, Saso Dzeroski, Jochen Hipp, Daniel A. Keim, Stefan Kramer, Hans-Peter Kriegel, Ulf Leser, Bing Liu, Heikki Mannila, Rosa Meo, Shinichi Morishita, Raymond T. Ng, Jian Pei, Prabhakar Raghavan, Myra Spiliopoulou, Jaideep Srivastava, Vicenç Torra

Proceedings of the Perspectives Workshop: Data Mining: The Next Generation, 11.07., 2004

2003

Preface.

Setsuo Arikawa, Koichi Furukawa, Shinichi Morishita, Hiroshi Motoda

Theor. Comput. Sci., 2003

A Fast and Sensitive Algorithm for Aligning Ests to the Human Genome.

Jun Ogasawara, Shinichi Morishita

J. Bioinform. Comput. Biol., 2003

Computing Highly Specific and Mismatch Tolerant Oligomers Efficiently.

Tomoyuki Yamada, Shinichi Morishita

Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2002

KDD Cup 2001 Report.

Jie Cheng, Christos Hatzis, Hisashi Hayashi, Mark-A. Krogel, Shinichi Morishita, David Page, Jun Sese

SIGKDD Explor., 2002

The Gene Resource Locator: gene locus maps for transcriptome analysis.

Toshihiko Honkura, Jun Ogasawara, Tomoyuki Yamada, Shinichi Morishita

Nucleic Acids Res., 2002

Answering the Most Correlated N Association Rules Efficiently.

Jun Sese, Shinichi Morishita

Proceedings of the Principles of Data Mining and Knowledge Discovery, 2002

Computing Optimal Hypotheses Efficiently for Boosting.

Shinichi Morishita

Proceedings of the Progress in Discovery Science, 2002

Practical Software for Aligning ESTs to Human Genome.

Jun Ogasawara, Shinichi Morishita

Proceedings of the Combinatorial Pattern Matching, 13th Annual Symposium, 2002

2001

Data Mining with optimized two-dimensional association rules.

Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama

ACM Trans. Database Syst., 2001

BodyMap incorporated PCR-based expression profiling data and a gene ranking system.

Jun Sese, Hitoshi Nikaidou, Shoko Kawamoto, Yuichi Minesaki, Shinichi Morishita, Kousaku Okubo

Nucleic Acids Res., 2001

Efficient Construction of Regression Trees with Range and Region Splitting.

Yasuhiko Morimoto, Hiromu Ishii, Shinichi Morishita

Mach. Learn., 2001

2000

BodyMap: a human and mouse gene expression database.

Teruyoshi Hishiki, Shoko Kawamoto, Shinichi Morishita, Kousaku Okubo

Nucleic Acids Res., 2000

Traversing Itemset Lattice with Statistical Metric Pruning.

Shinichi Morishita, Jun Sese

Proceedings of the Nineteenth ACM SIGMOD-SIGACT-SIGART Symposium on Principles of Database Systems, 2000

1999

Mining Optimized Association Rules for Numeric Attributes.

Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama

J. Comput. Syst. Sci., 1999

Parallel Branch-and-Bound Graph Search for Correlated Association Rules.

Shinichi Morishita, Akihiro Nakaya

Proceedings of the Large-Scale Parallel Data Mining, 1999

Towards Mining Gene Expression Database.

Shinichi Morishita, Teruyoshi Hishiki, Kousaku Okubo

Proceedings of the 1999 ACM SIGMOD Workshop on Research Issues in Data Mining and Knowledge Discovery, 1999

Weighted Majority Decision among Region Rules for a Categorical Dataset.

Akihiro Nakaya, Shinichi Morishita

Proceedings of the Discovery Science, 1999

Weighted Majority Decision among Several Region Rules for Scientific Discovery.

Akihiro Nakaya, Hideharu Furukawa, Shinichi Morishita

Proceedings of the Discovery Science, 1999

1998

On Classification and Regression.

Shinichi Morishita

Proceedings of the Discovery Science, 1998

1997

Avoiding Cartesian products for multiple joins.

Shinichi Morishita

J. ACM, 1997

Computing Optimized Rectilinear Regions for Association Rules.

Kunikazu Yoda, Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama

Proceedings of the Third International Conference on Knowledge Discovery and Data Mining (KDD-97), 1997

1996

An Extension of Van Gelder's Alternating Fixpoint to Magic Programs.

Shinichi Morishita

J. Comput. Syst. Sci., 1996

Constructing Efficient Decision Trees by Using Optimized Numeric Association Rules.

Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama

Proceedings of the VLDB'96, 1996

SONAR: System for Optimized Numeric AssociationRules.

Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama

Proceedings of the 1996 ACM SIGMOD International Conference on Management of Data, 1996

Data Mining Using Two-Dimensional Optimized Accociation Rules: Scheme, Algorithms, and Visualization.

Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama

Proceedings of the 1996 ACM SIGMOD International Conference on Management of Data, 1996

Interval Finding and Its Application to Data Mining.

Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama

Proceedings of the Algorithms and Computation, 7th International Symposium, 1996

1994

The Glue-Nail Deductive Database System: Design, Implementation, and Evaluation

Marcia A. Derr, Shinichi Morishita, Geoffrey Phipps

VLDB J., 1994

1993

Design and Implementation of the Glue-Nail Database System.

Marcia A. Derr, Shinichi Morishita, Geoffrey Phipps

Proceedings of the 1993 ACM SIGMOD International Conference on Management of Data, 1993

An Alternating Fixpoint Tailored to Magic Programs.

Shinichi Morishita

Proceedings of the Twelfth ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, 1993

1992

Avoiding Cartesian Products in Programs for Multiple Joins.

Shinichi Morishita

Proceedings of the Eleventh ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, 1992

An anternating fixpoint tailored to magic programs.

Shinichi Morishita

Proceedings of the Workshop on Deductive Databases held in conjunction with the Joint International Conference and Symposium on Logic Programming, 1992

1988

Lattice Programming Methodology.

Kouichi Fukunaga, Shinichi Morishita

Proceedings of the Logic Programming '88, 1988

1987

Symbolical Construction of Truth Value Domain for Logic Program.

Shinichi Morishita, Masayuki Numao, Shin'ichi Hirose

Proceedings of the Logic Programming, 1987

1986

Prolog Computation Model BPM and its Debugger PROEDIT2.

Shinichi Morishita, Masayuki Numao

Proceedings of the Logic Programming '86, 1986