Isidore Rigoutsos

According to our database1, Isidore Rigoutsos authored at least 38 papers between 1986 and 2018.

Collaborative distances:



In proceedings 
PhD thesis 




MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects.
Nucleic Acids Research, 2018

Threshold-seq: a tool for determining the threshold in short RNA-seq datasets.
Bioinformatics, 2017

Consequential considerations when mapping tRNA fragments.
BMC Bioinformatics, 2016

MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments.
Bioinformatics, 2016

Interactive exploration of RNA22 microRNA target predictions.
Bioinformatics, 2012

Anchoring millions of distinct reads on the human genome within seconds.
Proceedings of the EDBT 2010, 2010

Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes.
PLoS Computational Biology, 2009

Data mining and clinical data repositories: Insights from a 667, 000 patient data set.
Comp. in Bio. and Med., 2006

A generic motif discovery algorithm for sequential data.
Bioinformatics, 2006

Report on BIOKDD04: workshop on data mining in Bioinformatics.
SIGKDD Explorations, 2004

The web server of IBM's Bioinformatics and Pattern Discovery group: 2004 update.
Nucleic Acids Research, 2004

Of parts and relationships: an unending quest.
Proceedings of the 2004 ACM CIKM International Conference on Information and Knowledge Management, 2004

Chung-Kwei: a Pattern-discovery-based System for the Automatic Identification of Unsolicited E-mail Messages (SPAM).
Proceedings of the CEAS 2004, 2004

The web server of IBM's Bioinformatics and Pattern Discovery group.
Nucleic Acids Research, 2003

Evaluation of annotation strategies using an entire genome sequence.
Bioinformatics, 2003

Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining.
IEEE Trans. Knowl. Data Eng., 2002

QSAR in grossly underdetermined systems: Opportunities and issues.
IBM Journal of Research and Development, 2001

DELPHI: A pattern-based method for detecting sequence similarity.
IBM Journal of Research and Development, 2001

An Output-Sensitive Flexible Pattern Discovery Algorithm.
Proceedings of the Combinatorial Pattern Matching, 12th Annual Symposium, 2001

Pattern discovery on character sets and real-valued data: linear bound on irredundant motifs and an efficient polynomial time algorithm.
Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms, 2000

An Approximation Algorithm for Alignment of Multiple Sequences using Motif Discovery.
J. Comb. Optim., 1999

Sequence homology detection through large scale pattern discovery.
Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999

Building Dictionaries of 1D and 3D Motifs by Mining the Unaligned 1D Sequences of 17 Archaeal and Bacterial Genomes.
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

Representation and Matching of Small Flexible Molecules in Large Databases of 3D Molecular Information.
Pattern Discovery in Biomolecular Data, 1999

Managing Statistical Behavior of Large Data Sets in Shared-Nothing Architectures.
IEEE Trans. Parallel Distrib. Syst., 1998

Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm [published erratum appears in Bioinformatics 1998;14(2): 229].
Bioinformatics, 1998

Motif discovery without alignment or enumeration (extended abstract).
Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, 1998

Two-Dimensional Affine Invariants that Distribute Uniformly and can be Tuned to any Convex Feature Domain.
ICCV, 1998

Well-Behaved, Tunable 3D-Affine Invariants.
Proceedings of the 1998 Conference on Computer Vision and Pattern Recognition (CVPR '98), 1998

Automated Discovery of Active Motifs in Three Dimensional Molecules.
Proceedings of the Third International Conference on Knowledge Discovery and Data Mining (KDD-97), 1997

The Impact of Hashing Function Choice on the Load Balancing in Very Large Dartasets.
Proceedings of the 8th International Conference on Software Engineering and Knowledge Engineering, 1996

A Bayesian Approach to Model Matching with Geometric Hashing.
Computer Vision and Image Understanding, 1995

FLASH: A Fast Look-Up Algorithm for String Homology.
Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993

Distributed Bayesian object recognition.
Proceedings of the Conference on Computer Vision and Pattern Recognition, 1993

FLASH: a fast look-up algorithm for string homology.
Proceedings of the Conference on Computer Vision and Pattern Recognition, 1993

Massively Parallel Model Matching: Geometric Hashing on the Connection Machine.
IEEE Computer, 1992

An algorithm for point clustering and grid generation.
IEEE Trans. Systems, Man, and Cybernetics, 1991

Determining the 3-D Motion of a Rigid Surface Patch Without Correspondence under Perspective Projection.
Proceedings of the 5th National Conference on Artificial Intelligence. Philadelphia, 1986