Sorin Draghici

According to our database1, Sorin Draghici authored at least 72 papers between 1996 and 2021.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


Online presence:



COVID-19: disease pathways and gene expression changes predict methylprednisolone can improve outcome in severe cases.
Bioinform., 2021

GSMA: an approach to identify robust global and test Gene Signatures using Meta-Analysis.
Bioinform., 2020

Integrated Cancer Subtyping using Heterogeneous Genome-Scale Molecular Datasets.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

A new computational drug repurposing method using established disease-drug pair knowledge.
Bioinform., 2019

PINSPlus: a tool for tumor subtype discovery in integrated genomic data.
Bioinform., 2019

A novel computational approach for drug repurposing using systems biology.
Bioinform., 2018

Integrating 5hmC and gene expression data to infer regulatory mechanisms.
Bioinform., 2018

A survey of the approaches for identifying differential methylation using bisulfite sequencing data.
Briefings Bioinform., 2018

Disease Subtyping using Somatic Variant Data.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

DANUBE: Data-Driven Meta-ANalysis Using UnBiased Empirical Distributions - Applied to Biological Pathway Analysis.
Proc. IEEE, 2017

A Novel Pathway Analysis Approach Based on the Unexplained Disregulation of Genes.
Proc. IEEE, 2017

An approach to infer putative disease-specific mechanisms using neighboring gene networks.
Bioinform., 2017

MicroRNA-Augmented Pathways (mirAP) and Their Applications to Pathway Analysis and Disease Subtyping.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

A novel bi-level meta-analysis approach: applied to biological pathway analysis.
Bioinform., 2016

A Systems Biology Approach for Unsupervised Clustering of High-Dimensional Data.
Proceedings of the Machine Learning, Optimization, and Big Data, 2016

TOMAS: A novel TOpology-aware Meta-Analysis approach applied to System biology.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

A systems biology approach for the identification of significantly perturbed genes.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

The International Society of Computational Biology presents: the Great Lakes Bioinformatics Conference, May 16-18, 2014, Cincinnati, Ohio.
Bioinform., 2014

Modeling time-dependent transcription effects of HER2 oncogene and discovery of a role for E2F2 in breast cancer cell-matrix adhesion.
Bioinform., 2014

Distilled Single Cell Genome Sequencing and De Novo Assembly for Sparse Microbial Communities
CoRR, 2013

Z-Bag: a Classification Ensemble System with posterior Probabilistic outputs.
Comput. Intell., 2013

Assessing co-regulation of directly linked genes in biological networks using microarray time series analysis.
Biosyst., 2013

Distilled single-cell genome sequencing and <i>de novo</i> assembly for sparse microbial communities.
Bioinform., 2013

A genetic algorithms framework for estimating individual gene contributions in signaling pathways.
Proceedings of the IEEE Congress on Evolutionary Computation, 2013

Detecting Phenotype-Specific Interactions between Biological Processes from Microarray Data and Annotations.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Down-weighting overlapping genes improves gene set analysis.
BMC Bioinform., 2012

A method for analysis and correction of cross-talk effects in pathway analysis.
Proceedings of the 2012 International Joint Conference on Neural Networks (IJCNN), 2012

Incorporating Gene Significance in the Impact Analysis of Signaling Pathways.
Proceedings of the 11th International Conference on Machine Learning and Applications, 2012

MDAsim: A multiple displacement amplification simulator.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways.
Bioinform., 2011

Predicting Novel Human Gene Ontology Annotations Using Semantic Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010

Signaling pathways coupling phenomena.
Proceedings of the International Joint Conference on Neural Networks, 2010

A novel signaling pathway impact analysis.
Bioinform., 2009

KUTE-BASE: storing, downloading and exporting MIAME-compliant microarray experiments in minutes rather than hours.
Bioinform., 2008

Identifying uncertainty regions in Support Vector Machines using geometric margin and convex hulls.
Proceedings of the International Joint Conference on Neural Networks, 2008

Machine Learning and Its Applications to Biology.
PLoS Comput. Biol., 2007

Onto-Tools: new additions and improvements in 2006.
Nucleic Acids Res., 2007

Semantic Analysis of Genome Annotations using Weighting Schemes.
Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

A System Biology Approach for the Steady-State Analysis of Gene Signaling Networks.
Proceedings of the Progress in Pattern Recognition, 2007

New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate.
Nucleic Acids Res., 2006

Babel's tower revisited: a universal resource for cross-referencing across annotation databases.
Bioinform., 2006

Application of an objective method for localizing bilateral cortical FDG PET abnormalities to guide the resection of epileptic foci.
IEEE Trans. Biomed. Eng., 2005

Recent additions and improvements to the Onto-Tools.
Nucleic Acids Res., 2005

A semantic analysis of the annotations of the human genome.
Bioinform., 2005

Ontological analysis of gene expression data: current tools, limitations, and open problems.
Bioinform., 2005

Identification of Genomic Signatures for the Design of Assays for the Detection and Monitoring of Anthrax Threats.
Proceedings of the Biocomputing 2005, 2005

A Novel Bioinformatics Technique for Predicting Condition-specific Transcription Factor Binding Sites.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments.
Nucleic Acids Res., 2004

Discovering Document Semantics QBYS: A System for Querying the WWW by Semantics.
Multim. Tools Appl., 2004

Accuracy of cDNA microarray methods to detect small gene expression changes induced by neuregulin on breast epithelial cells.
BMC Bioinform., 2004

Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate.
Nucleic Acids Res., 2003

Predicting HIV drug resistance with neural networks.
Bioinform., 2003

Noise Sampling Method: An ANOVA Approach Allowing Robust Selection of Differentially Regulated Genes Measured by DNA Microarrays.
Bioinform., 2003

Mining HIV Dynamics Using Independent Component Analysis.
Bioinform., 2003

Cancer Prediction by Protein Microarray Profiling.
Proceedings of the IASTED International Conference on Neural Networks and Computational Intelligence, 2003

A Back Propagation Neural Network for Localizing Abnormal Cortical Regions in FDG PET Images in Epileptic Children.
Proceedings of the Artificial Neural Nets Problem Solving Methods, 2003

Space-filling curves and Kolmogorov superposition-based neural networks.
Neural Networks, 2002

On the capabilities of neural networks using limited precision weights.
Neural Networks, 2002

A SOFM Approach to Predicting HIV Drug Resistance.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

The constraint based decomposition (CBD) training architecture.
Neural Networks, 2001

Neural Networks in Analog Hardware - Design and Implementation Issues.
Int. J. Neural Syst., 2000

Correlation of HIV protease structure with Indinavir resistance: a data mining and neural networks approach.
Proceedings of the Data Mining and Knowledge Discovery: Theory, 2000

A Constructive Approach to Calculating Lower Entropy Bounds.
Neural Process. Lett., 1999

On the Computational Power of Limited Precision Weights Neutral Networks in Classification Problems: How to Calculate the Weight Range so that a Solution Will Exist.
Proceedings of the Foundations and Tools for Neural Modeling, 1999

A VLSI neural network classifier based on integer-valued weights.
Proceedings of the International Joint Conference Neural Networks, 1999

Some new results on the capabilities of integer weights neural networks in classification problems.
Proceedings of the International Joint Conference Neural Networks, 1999

On the Complexity of VLSI-Friendly Neural Networks for Classification Problems.
Proceedings of the Advances in Artificial Intelligence, 1998

A Neural Network Based Artificial Vision System for Licence Plate Recognition.
Int. J. Neural Syst., 1997

On limited fan-in optimal neural networks.
Proceedings of the 4th Brazilian Symposium on Neural Networks, 1997

On the Possibilities of the Limited Precision Weights Neural Networks in Classification Problems.
Proceedings of the Biological and Artificial Computation: From Neuroscience to Technology, 1997

Using constraints to improve generalisation and training of feedforward neural networks: constraint based decomposition and complex backpropagation.
PhD thesis, 1996

Some enhancements of the constraint based decomposition training architecture.
Proceedings of International Conference on Neural Networks (ICNN'96), 1996