A. Keith Dunker

According to our database, A. Keith Dunker authored at least 52 papers between 1994 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Characterization of intrinsically disordered regions in proteins informed by human genetic diversity.

Shehab S. Ahmed, Zaara T. Rifat, Ruchi Lohia, Arthur J. Campbell, A. Keith Dunker, M. Sohel Rahman, Sumaiya Iqbal

PLoS Comput. Biol., 2022

2021

DescribePROT: database of amino acid-level protein structure and function predictions.

Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Zoran Obradovic, Johannes Söding, Martin Steinegger, Yaoqi Zhou, Lukasz A. Kurgan

Nucleic Acids Res., 2021

Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysis.

Gerard Kian-Meng Goh, A. Keith Dunker, James A. Foster, Vladimir N. Uversky

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

AI for infectious disease modelling and therapeutics.

Gil Alterovitz, Wei-Lun Alterovitz, Gail H. Cassell, Lixin Zhang, A. Keith Dunker

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

2020

DisProt: intrinsic protein disorder annotation in 2020.

András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan

Nucleic Acids Res., 2020

Session Introduction.

Lukasz A. Kurgan, Predrag Radivojac, Joel L. Sussman, A. Keith Dunker

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

Many-to-One Binding by Intrinsically Disordered Protein Regions.

Wei-Lun Alterovitz, Eshel Faraggi, Christopher J. Oldfield, Jingwei Meng, Bin Xue, Fei Huang, Pedro Romero, Andrzej Kloczkowski, Vladimir N. Uversky, A. Keith Dunker

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

Biocomputing 2021: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2021

Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Tiffany Murray, Teri E. Klein

, 2020

2019

Entropy, Fluctuations, and Disordered Proteins.

Eshel Faraggi, A. Keith Dunker, Robert L. Jernigan, Andrzej Kloczkowski

Entropy, 2019

2018

Identification of intrinsic disorder in complexes from Protein Data Bank.

Jianhong Zhou, Christopher J. Oldfield, Fei Huang, Wenying Yan, Bairong Shen, A. Keith Dunker

Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018

2017

DisProt 7.0: a major update of the database of disordered proteins.

Damiano Piovesan, Francesco Tabaro, Ivan Micetic, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmár, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Éva Schád, Antoine Schramm, Beáta Szabó, Ágnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, Silvio C. E. Tosatto

Nucleic Acids Res., 2017

2015

Erratum to: Improving protein order-disorder classification using charge-hydropathy plots.

Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker

BMC Bioinform., 2015

2014

pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins.

Mihaly Varadi, Simone Kosol, Pierre Lebrun, Erica Valentini, Martin Blackledge, A. Keith Dunker, Isabella C. Felli, Julie D. Forman-Kay, Richard W. Kriwacki, Roberta Pierattelli, Joel L. Sussman, Dmitri I. Svergun, Vladimir N. Uversky, Michele Vendruscolo, David S. Wishart, Peter E. Wright, Peter Tompa

Nucleic Acids Res., 2014

Identification of genes and pathways involved in kidney renal clear cell carcinoma.

William Yang, Kenji Yoshigoe, Xiang Qin, Jun S. Liu, Jack Y. Yang, Andrzej Niemierko, Youping Deng, Yunlong Liu, A. Keith Dunker, Zhongxue Chen, Liangjiang Wang, Dong Xu, Hamid R. Arabnia, Weida Tong, Mary Qu Yang

BMC Bioinform., 2014

Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms.

Jack Y. Yang, A. Keith Dunker, Jun S. Liu, Xiang Qin, Hamid R. Arabnia, William Yang, Andrzej Niemierko, Zhongxue Chen, Zuojie Luo, Liangjiang Wang, Yunlong Liu, Dong Xu, Youping Deng, Weida Tong, Mary Qu Yang

BMC Bioinform., 2014

Improving protein order-disorder classification using charge-hydropathy plots.

Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker

BMC Bioinform., 2014

2013

D²P²: database of disordered protein predictions.

Matt E. Oates, Pedro Romero, Takashi Ishida, Mohamed F. Ghalwash, Marcin J. Mizianty, Bin Xue, Zsuzsanna Dosztányi, Vladimir N. Uversky, Zoran Obradovic, Lukasz A. Kurgan, A. Keith Dunker, Julian Gough

Nucleic Acids Res., 2013

2012

MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins.

Fatemeh Miri Disfani, Wei-Lun Hsu, Marcin J. Mizianty, Christopher J. Oldfield, Bin Xue, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan

Bioinform., 2012

Subclassifying Disordered Proteins by the CH-CDF Plot Method.

Fei Huang, Christopher J. Oldfield, Jingwei Meng, Wei-Lun Hsu, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Intrinsic Protein Disorder and Protein-Protein Interactions.

Wei-Lun Hsu, Christopher J. Oldfield, Jingwei Meng, Fei Huang, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Session introduction.

Jianhan Chen, Jianlin Cheng, A. Keith Dunker

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2011

In-silico prediction of disorder content using hybrid sequence representation.

Marcin J. Mizianty, Tuo Zhang, Bin Xue, Yaoqi Zhou, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan

BMC Bioinform., 2011

2010

Archaic chaos: intrinsically disordered proteins in Archaea.

Bin Xue, Robert W. Williams, Christopher J. Oldfield, A. Keith Dunker, Vladimir N. Uversky

BMC Syst. Biol., 2010

2009

Protein sequence alignment and structural disorder: a substitution matrix for an extended alphabet.

Uros Midic, A. Keith Dunker, Zoran Obradovic

Proceedings of the ACM SIGKDD Workshop on Statistical and Relational Learning in Bioinformatics, 2009

A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants.

Jianjiong Gao, Ganesh Kumar Agrawal, Jay J. Thelen, Zoran Obradovic, A. Keith Dunker, Dong Xu

Proceedings of the Bioinformatics and Computational Biology, 2009

2008

Malleable Machines in Transcription Regulation: The Mediator Complex.

Ágnes Tóth-Petróczy, Christopher J. Oldfield, István Simon, Yuichiro Takagi, A. Keith Dunker, Vladimir N. Uversky, Mónika Fuxreiter

PLoS Comput. Biol., 2008

2007

DisProt: the Database of Disordered Proteins.

Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, Vladimir Vacic, Marc S. Cortese, Ágnes Tantos, Beáta Szabó, Peter Tompa, Jake Yue Chen, Vladimir N. Uversky, Zoran Obradovic, A. Keith Dunker

Nucleic Acids Res., 2007

Exploring alternative knowledge representations for protein secondary-structure prediction.

Uros Midic, A. Keith Dunker, Zoran Obradovic

Int. J. Data Min. Bioinform., 2007

Composition Profiler: a tool for discovery and visualization of amino acid composition differences.

Vladimir Vacic, Vladimir N. Uversky, A. Keith Dunker, Stefano Lonardi

BMC Bioinform., 2007

Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3.

Christopher J. Oldfield, Jingwei Meng, Jack Y. Yang, Vladimir N. Uversky, A. Keith Dunker

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

Protein Intrinsic Disorder, Cell Signaling, Drug Discovery, and Alternative Splicing.

A. Keith Dunker

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

Intrinsically Disordered Proteins in Human Diseases.

Vladimir N. Uversky, Christopher J. Oldfield, A. Keith Dunker

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

Intrinsically Disordered Proteins: An Update.

A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

Intrinsically Disordered Proteins: Predictions and Applications.

A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

Length-dependent prediction of protein intrinsic disorder.

Kang Peng, Predrag Radivojac, Slobodan Vucetic, A. Keith Dunker, Zoran Obradovic

BMC Bioinform., 2006

2005

Optimizing Long Intrinsic Disorder Predictors with Protein Evolutionary Information.

Kang Peng, Slobodan Vucetic, Predrag Radivojac, Celeste J. Brown, A. Keith Dunker, Zoran Obradovic

J. Bioinform. Comput. Biol., 2005

DisProt: a database of protein disorder.

Slobodan Vucetic, Zoran Obradovic, Vladimir Vacic, Predrag Radivojac, Kang Peng, Lilia M. Iakoucheva, Marc S. Cortese, J. David Lawson, Celeste J. Brown, Jason G. Sikes, Crystal D. Newton, A. Keith Dunker

Bioinform., 2005

Improving Protein Secondary-Structure Prediction by Predicting Ends of Secondary-Structure Segments.

Uros Midic, A. Keith Dunker, Zoran Obradovic

Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

Intrinsic Disorder and Protein modifications: Building an SVM Predictor for Methylation.

Kenneth Daily, Predrag Radivojac, A. Keith Dunker

Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

2004

Classification and knowledge discovery in protein databases.

Predrag Radivojac, Nitesh V. Chawla, A. Keith Dunker, Zoran Obradovic

J. Biomed. Informatics, 2004

Feature Selection Filters Based on the Permutation Test.

Predrag Radivojac, Zoran Obradovic, A. Keith Dunker, Slobodan Vucetic

Proceedings of the Machine Learning: ECML 2004, 2004

2003

Prediction of Boundaries Between Intrinsically Ordered and Disordered Protein Regions.

Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker

Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

Special Paper - Introduction.

Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein

Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

2002

Improving Sequence Alignments For Intrinsically Disordered Proteins.

Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

Preface.

Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

2001

The Protein Non-Folding Problem: Amino Acid Determinants of Intrinsic Order and Disorder.

R. M. Williams, Zoran Obradovic, V. Mathura, W. Braun, E. C. Garner, J. Young, S. Takayama, Celeste J. Brown, A. Keith Dunker

Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

Disorder and Flexibility in Protein Structure and Function - Session Introduction.

Clay Bracken, Malin M. Young, A. Keith Dunker

Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

2000

Intelligent Data Analysis for Protein Disorder Prediction.

Pedro Romero, Zoran Obradovic, A. Keith Dunker

Artif. Intell. Rev., 2000

1999

Disorder in Protein Structure and Function - Session Introduction.

C. Kissinger, A. Keith Dunker, Eugene I. Shakhnovich

Proceedings of the 4th Pacific Symposium on Biocomputing, 1999

1997

Identifying disordered regions in proteins from amino acid sequence.

Pedro Romero, Zoran Obradovic, C. Kissinger, J. E. Villafranca, A. Keith Dunker

Proceedings of International Conference on Neural Networks (ICNN'97), 1997

1994

Identifying Repeated Structural Elements in Folded Proteins.

R. T. Miller, Richard J. Douthart, A. Keith Dunker

Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

Protein Structure Prediction: Introductios.

A. Keith Dunker, Richard H. Lathrop

Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994