Vicente Acuña

According to our database, Vicente Acuña authored at least 20 papers between 2006 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2026

METACONE: A scalable framework for exploring the conversion cone of metabolic networks.

Álvaro Altamirano, Ignacio Tapia, Vicente Acuña, Daniel Garrido, Pedro A. Saa

Comput. Biol. Chem., 2026

2021

A family of tree-based generators for bubbles in directed graphs.

Vicente Acuña, Leandro Ishi Soares de Lima, Giuseppe F. Italiano, Luca Pepè Sciarria, Marie-France Sagot, Blerina Sinaimeri

J. Graph Algorithms Appl., 2021

2020

A Family of Tree-Based Generators for Bubbles in Directed Graphs.

Vicente Acuña, Leandro Lima, Giuseppe F. Italiano, Luca Pepè Sciarria, Marie-France Sagot, Blerina Sinaimeri

Proceedings of the Combinatorial Algorithms - 31st International Workshop, 2020

2017

On Bubble Generators in Directed Graphs.

Vicente Acuña, Roberto Grossi, Giuseppe F. Italiano, Leandro Lima, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot, Blerina Sinaimeri

Proceedings of the Graph-Theoretic Concepts in Computer Science, 2017

2016

Deciphering transcriptional regulations coordinating the response to environmental changes.

Vicente Acuña, Andrés Aravena, Carito Guziolowski, Damien Eveillard, Anne Siegel, Alejandro Maass

BMC Bioinform., 2016

Enumeration of minimal stoichiometric precursor sets in metabolic networks.

Ricardo Andrade, Martin Wannagat, Cecilia Coimbra Klein, Vicente Acuña, Alberto Marchetti-Spaccamela, Paulo Vieira Milreu, Leen Stougie, Marie-France Sagot

Algorithms Mol. Biol., 2016

2014

Solving the maximum edge biclique packing problem on unbalanced bipartite graphs.

Vicente Acuña, Carlos Eduardo Ferreira, Alexandre S. Freire, Eduardo Moreno

Discret. Appl. Math., 2014

Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure.

Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret, Vicente Acuña, Etienne Birmelé, Michele Borassi, Christophe Junot, Alberto Marchetti-Spaccamela, Andrea Marino, Leen Stougie, Fabien Jourdan, Pierluigi Crescenzi, Vincent Lacroix, Marie-France Sagot

Bioinform., 2014

Modeling Parsimonious Putative Regulatory Networks: Complexity and Heuristic Approach.

Vicente Acuña, Andrés Aravena, Alejandro Maass, Anne Siegel

Proceedings of the Verification, Model Checking, and Abstract Interpretation, 2014

2012

Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets.

Vicente Acuña, Etienne Birmelé, Ludovic Cottret, Pierluigi Crescenzi, Fabien Jourdan, Vincent Lacroix, Alberto Marchetti-Spaccamela, Andrea Marino, Paulo Vieira Milreu, Marie-France Sagot, Leen Stougie

Theor. Comput. Sci., 2012

Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks.

Vicente Acuña, Paulo Vieira Milreu, Ludovic Cottret, Alberto Marchetti-Spaccamela, Leen Stougie, Marie-France Sagot

Bioinform., 2012

Minimum Ratio Cover of Matrix Columns by Extreme Rays of Its Induced Cone.

Alexandre S. Freire, Vicente Acuña, Pilu Crescenzi, Carlos Eduardo Ferreira, Vincent Lacroix, Paulo Vieira Milreu, Eduardo Moreno, Marie-France Sagot

Proceedings of the Combinatorial Optimization - Second International Symposium, 2012

2010

Models and algorithms for metabolic networks: elementary modes and precursor sets.

Vicente Acuña

PhD thesis, 2010

Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, <i>Baumannia cicadellinicola</i> and <i>Sulcia muelleri</i>, with Their Insect Host, <i>Homalodisca coagulata</i>.

Ludovic Cottret, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela, Leen Stougie, Hubert Charles, Marie-France Sagot

PLoS Comput. Biol., 2010

The biclique k-clustering problem in bipartite graphs and its application in bioinformatics.

Vicente Acuña, Carlos Eduardo Ferreira, Alexandre S. Freire, Eduardo Moreno

Electron. Notes Discret. Math., 2010

A note on the complexity of finding and enumerating elementary modes.

Vicente Acuña, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie

Biosyst., 2010

Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms.

Paulo Vieira Milreu, Vicente Acuña, Etienne Birmelé, Pierluigi Crescenzi, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie, Vincent Lacroix

Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010

2009

Modes and cuts in metabolic networks: Complexity and algorithms.

Vicente Acuña, Flavio Chierichetti, Vincent Lacroix, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie

Biosyst., 2009

2008

Enumerating Precursor Sets of Target Metabolites in a Metabolic Network.

Ludovic Cottret, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela, Fábio Viduani Martinez, Marie-France Sagot, Leen Stougie

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

2006

Coding with variable block maps.

Vicente Acuña, Gilles Didier, Alejandro Maass

Theor. Comput. Sci., 2006