Vipin Sachdeva

Orcid: 0000-0001-7914-0185

According to our database1, Vipin Sachdeva authored at least 31 papers between 2005 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2022
Optimized Mappings for Symmetric Range-Limited Molecular Force Calculations on FPGAs.
Proceedings of the 32nd International Conference on Field-Programmable Logic and Applications, 2022

2021
System-Level Modeling of GPU/FPGA Clusters for Molecular Dynamics Simulations.
Proceedings of the 2021 IEEE High Performance Extreme Computing Conference, 2021

Upgrade of FPGA Range-Limited Molecular Dynamics to Handle Hundreds of Processors.
Proceedings of the 29th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2021

Particle Mesh Ewald for Molecular Dynamics in OpenCL on an FPGA Cluster.
Proceedings of the 29th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2021

2020
Efficient Parallel Algorithms for error correction and transcriptome assembly of biological sequences.
PhD thesis, 2020

An OpenCL 3D FFT for Molecular Dynamics Simulations on Multiple FPGAs.
CoRR, 2020

A Communication-Efficient Multi-Chip Design for Range-Limited Molecular Dynamics.
Proceedings of the 2020 IEEE High Performance Extreme Computing Conference, 2020

Execution of Complete Molecular Dynamics Simulations on Multiple FPGAs.
Proceedings of the 2020 IEEE High Performance Extreme Computing Conference, 2020

2019
Fully Integrated On-FPGA Molecular Dynamics Simulations.
CoRR, 2019

Fully integrated FPGA molecular dynamics simulations.
Proceedings of the International Conference for High Performance Computing, 2019

Molecular Dynamics Range-Limited Force Evaluation Optimized for FPGAs.
Proceedings of the 30th IEEE International Conference on Application-specific Systems, 2019

2017
OpenRBC: A Fast Simulator of Red Blood Cells at Protein Resolution.
CoRR, 2017

K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity.
BMC Bioinform., 2017

OpenCL for HPC with FPGAs: Case study in molecular electrostatics.
Proceedings of the 2017 IEEE High Performance Extreme Computing Conference, 2017

2016
A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code.
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

2014
Parallelization of the Trinity Pipeline for De Novo Transcriptome Assembly.
Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

Exploring HPC-based scientific software as a service using CometCloud.
Proceedings of the 10th IEEE International Conference on Collaborative Computing: Networking, 2014

K-mer clustering algorithm using a MapReduce approach.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
Determination of performance characteristics of scientific applications on IBM Blue Gene/Q.
IBM J. Res. Dev., 2013

2012
Coupling a Basin Modeling and a Seismic Code using MOAB.
Proceedings of the International Conference on Computational Science, 2012

Enabling High-Performance Computing as a Service.
Computer, 2012

Mesh Interface Resolution and Ghost Exchange in a Parallel Mesh Representation.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

2011
p_2Matlab: Productive Parallel Matlab for the Exascale.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

2010
Evaluating Cell/B.E software cache for ClustalW.
Proceedings of the International Symposium on Circuits and Systems (ISCAS 2010), May 30, 2010

Enabling Bioinformatics Algorithms on the Cell/B.E. Processor.
Proceedings of the Scientific Computing with Multicore and Accelerators., 2010

2009
Evaluating the Jaccard-Tanimoto Index on Multi-core Architectures.
Proceedings of the Computational Science, 2009

2008
Exploring the viability of the Cell Broadband Engine for bioinformatics applications.
Parallel Comput., 2008

2007
Characterizing and Improving the Performance of Bioinformatics Workloads on the POWER5 Architecture.
Proceedings of the IEEE 10th International Symposium on Workload Characterization, 2007

2006
Poster reception - Pairwise alignments on the cell processor.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

2005
Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic.
Proceedings of the ISCA 18th International Conference on Parallel and Distributed Computing Systems, 2005


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