David A. Bader

According to our database1, David A. Bader authored at least 212 papers between 1995 and 2019.

Collaborative distances:

Awards

IEEE Fellow

IEEE Fellow 2010, "For contributions to parallel algorithms for combinatorial problems and computational biology".

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

Homepages:

On csauthors.net:

Bibliography

2019
Editorial from the Editor-in-Chief.
TOPC, 2019

A Linear Time Algorithm for Finding Minimum Spanning Tree Replacement Edges.
CoRR, 2019

Tailoring parallel alternating criteria search for domain specific MIPs: Application to maritime inventory routing.
Computers & OR, 2019

Performance Impact of Memory Channels on Sparse and Irregular Algorithms.
Proceedings of the 9th IEEE/ACM Workshop on Irregular Applications: Architectures and Algorithms, 2019

Skip the Intersection: Quickly Counting Common Neighbors on Shared-Memory Systems.
Proceedings of the 2019 IEEE High Performance Extreme Computing Conference, 2019

2018
Benchmarking for Graph Clustering and Partitioning.
Proceedings of the Encyclopedia of Social Network Analysis and Mining, 2nd Edition, 2018

Incrementally updating Katz centrality in dynamic graphs.
Social Netw. Analys. Mining, 2018

Numerically approximating centrality for graph ranking guarantees.
J. Comput. Science, 2018

Alternating criteria search: a parallel large neighborhood search algorithm for mixed integer programs.
Comp. Opt. and Appl., 2018

Accelerating GPU betweenness centrality.
Commun. ACM, 2018

Massive-scale Streaming Analytics: Models, Parallelism, & Real-world Applications.
Proceedings of the 30th on Symposium on Parallelism in Algorithms and Architectures, 2018

Introduction to HiCOMB 2018.
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium Workshops, 2018

Logarithmic Radix Binning and Vectorized Triangle Counting.
Proceedings of the 2018 IEEE High Performance Extreme Computing Conference, 2018

Fast and Adaptive List Intersections on the GPU.
Proceedings of the 2018 IEEE High Performance Extreme Computing Conference, 2018

Hornet: An Efficient Data Structure for Dynamic Sparse Graphs and Matrices on GPUs.
Proceedings of the 2018 IEEE High Performance Extreme Computing Conference, 2018

Scalable Katz Ranking Computation in Large Static and Dynamic Graphs.
Proceedings of the 26th Annual European Symposium on Algorithms, 2018

2017
Modeling the Power Variability of Core Speed Scaling on Homogeneous Multicore Systems.
Scientific Programming, 2017

Designing and implementing a heuristic cross-architecture combination for graph traversal.
J. Parallel Distrib. Comput., 2017

A parallel local search framework for the Fixed-Charge Multicommodity Network Flow problem.
Computers & OR, 2017

Spectral partitioning with blends of eigenvectors.
J. Complex Networks, 2017

Local Community Detection in Dynamic Graphs Using Personalized Centrality.
Algorithms, 2017

Approximating Personalized Katz Centrality in Dynamic Graphs.
Proceedings of the Parallel Processing and Applied Mathematics, 2017

When Good Enough Is Better: Energy-Aware Scheduling for Multicore Servers.
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, 2017

Introduction to EMBRACE Workshop.
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, 2017

Graph Ranking Guarantees for Numerical Approximations to Katz Centrality.
Proceedings of the International Conference on Computational Science, 2017

Design and implementation of parallel PageRank on multicore platforms.
Proceedings of the 2017 IEEE High Performance Extreme Computing Conference, 2017

Quickly finding a truss in a haystack.
Proceedings of the 2017 IEEE High Performance Extreme Computing Conference, 2017

Exact and Parallel Triangle Counting in Dynamic Graphs.
Proceedings of the 24th IEEE International Conference on High Performance Computing, 2017

Ranking in Dynamic Graphs Using Exponential Centrality.
Proceedings of the Complex Networks & Their Applications VI, 2017

Streaming Graph Sampling with Size Restrictions.
Proceedings of the 2017 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining 2017, Sydney, Australia, July 31, 2017

A Dynamic Algorithm for Updating Katz Centrality in Graphs.
Proceedings of the 2017 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining 2017, Sydney, Australia, July 31, 2017

2016
Sorting Signed Permutations by Reversal (Reversal Distance).
Encyclopedia of Algorithms, 2016

High Performance Algorithm Engineering for Large-Scale Problems.
Encyclopedia of Algorithms, 2016

Engineering Algorithms for Computational Biology.
Encyclopedia of Algorithms, 2016

HPC node performance and energy modeling with the co-location of applications.
The Journal of Supercomputing, 2016

A New Parallel Method for Binary Black Hole Simulations.
Scientific Programming, 2016

Tracking local communities in streaming graphs with a dynamic algorithm.
Social Netw. Analys. Mining, 2016

Exemplar or matching: modeling DCJ problems with unequal content genome data.
J. Comb. Optim., 2016

Evolving MPI+X Toward Exascale.
IEEE Computer, 2016

A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code.
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

GABB 2016 Keynote.
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

HiCOMB Introduction and Committees.
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

Mathematical foundations of the GraphBLAS.
Proceedings of the 2016 IEEE High Performance Extreme Computing Conference, 2016

cuSTINGER: Supporting dynamic graph algorithms for GPUs.
Proceedings of the 2016 IEEE High Performance Extreme Computing Conference, 2016

A local measure of community change in dynamic graphs.
Proceedings of the 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, 2016

Aging data in dynamic graphs: A comparative study.
Proceedings of the 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, 2016

New stopping criteria for spectral partitioning.
Proceedings of the 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, 2016

2015
Editor's Note.
IEEE Trans. Parallel Distrib. Syst., 2015

WEC: Improving Durability of SSD Cache Drives by Caching Write-Efficient Data.
IEEE Trans. Computers, 2015

State of the Journal.
IEEE Trans. Computers, 2015

Behavioral clusters in dynamic graphs.
Parallel Computing, 2015

Fast Incremental Community Detection on Dynamic Graphs.
Proceedings of the Parallel Processing and Applied Mathematics, 2015

HiCOMB Introduction and Committees.
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015

A Methodology for Co-Location Aware Application Performance Modeling in Multicore Computing.
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015

ParLearning Keynotes.
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015

Fast Execution of Simultaneous Breadth-First Searches on Sparse Graphs.
Proceedings of the 21st IEEE International Conference on Parallel and Distributed Systems, 2015

Graphs, Matrices, and the GraphBLAS: Seven Good Reasons.
Proceedings of the International Conference on Computational Science, 2015

A fast, energy-efficient abstraction for simultaneous breadth-first searches.
Proceedings of the 2015 IEEE High Performance Extreme Computing Conference, 2015

A Dynamic Algorithm for Local Community Detection in Graphs.
Proceedings of the 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, 2015

Parallel Methods for Verifying the Consistency of Weakly-Ordered Architectures.
Proceedings of the 2015 International Conference on Parallel Architectures and Compilation, 2015

2014
Benchmarking for Graph Clustering and Partitioning.
Encyclopedia of Social Network Analysis and Mining, 2014

Introduction to Special Issue ALENEX'12.
ACM Journal of Experimental Algorithmics, 2014

Scalable and High Performance Betweenness Centrality on the GPU.
Proceedings of the International Conference for High Performance Computing, 2014

A performance evaluation of open source graph databases.
Proceedings of the first workshop on Parallel programming for analytics applications, 2014

Load balanced clustering coefficients.
Proceedings of the first workshop on Parallel programming for analytics applications, 2014

HiCOMB Introduction and Committees.
Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

Revisiting Edge and Node Parallelism for Dynamic GPU Graph Analytics.
Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

GABB Introduction.
Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

Designing a Heuristic Cross-Architecture Combination for Breadth-First Search.
Proceedings of the 43rd International Conference on Parallel Processing, 2014

Optimizing energy consumption and parallel performance for static and dynamic betweenness centrality using GPUs.
Proceedings of the IEEE High Performance Extreme Computing Conference, 2014

A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents.
Proceedings of the Computing and Combinatorics - 20th International Conference, 2014

2013
PASQUAL: Parallel Techniques for Next Generation Genome Sequence Assembly.
IEEE Trans. Parallel Distrib. Syst., 2013

GraphCT: Multithreaded Algorithms for Massive Graph Analysis.
IEEE Trans. Parallel Distrib. Syst., 2013

Massive streaming data analytics: a graph-based approach.
ACM Crossroads, 2013

Sustainable Software Development for Next-Gen Sequencing (NGS) Bioinformatics on Emerging Platforms.
CoRR, 2013

A Brief Study of Open Source Graph Databases.
CoRR, 2013

Faster Clustering Coefficient Using Vertex Covers.
Proceedings of the International Conference on Social Computing, SocialCom 2013, 2013

Measuring the Sensitivity of Graph Metrics to Missing Data.
Proceedings of the Parallel Processing and Applied Mathematics, 2013


HiCOMB Introduction.
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

Multithreaded Community Monitoring for Massive Streaming Graph Data.
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

Designing Hybrid Architectures for Massive-Scale Graph Analysis.
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

Investigating Graph Algorithms in the BSP Model on the Cray XMT.
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

Energy-Efficient Scheduling for Best-Effort Interactive Services to Achieve High Response Quality.
Proceedings of the 27th IEEE International Symposium on Parallel and Distributed Processing, 2013

Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes.
Proceedings of the International Conference on Computational Science, 2013

Faster Betweenness Centrality Based on Data Structure Experimentation.
Proceedings of the International Conference on Computational Science, 2013


A new parallel algorithm for connected components in dynamic graphs.
Proceedings of the 20th Annual International Conference on High Performance Computing, 2013

A statistical framework for streaming graph analysis.
Proceedings of the Advances in Social Networks Analysis and Mining 2013, 2013

2012
Efficient Data Migration to Conserve Energy in Streaming Media Storage Systems.
IEEE Trans. Parallel Distrib. Syst., 2012

ACM journal on experimental algorithmics special issue on multicore algorithms.
ACM Journal of Experimental Algorithmics, 2012

A Fast Algorithm for Streaming Betweenness Centrality.
Proceedings of the 2012 International Conference on Privacy, 2012

Enhancing Cache Coherent Architectures with access patterns for embedded manycore systems.
Proceedings of the 2012 International Symposium on System on Chip, 2012

Scalable Multi-threaded Community Detection in Social Networks.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

HiCOMB Introduction.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

HCW 2012 Keynote Talk: Analyzing massive data using heterogeneous computing.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

GPU merge path: a GPU merging algorithm.
Proceedings of the International Conference on Supercomputing, 2012

Analysis of streaming social networks and graphs on multicore architectures.
Proceedings of the 2012 IEEE International Conference on Acoustics, 2012

STINGER: High performance data structure for streaming graphs.
Proceedings of the IEEE Conference on High Performance Extreme Computing, 2012

Task-based parallel breadth-first search in heterogeneous environments.
Proceedings of the 19th International Conference on High Performance Computing, 2012

Parallel community detection for massive graphs.
Proceedings of the Graph Partitioning and Graph Clustering, 2012

2011
Hybrid Programming With SIMPLE.
Proceedings of the Encyclopedia of Parallel Computing, 2011

SWARM: A Parallel Programming Framework for Multicore Processors.
Proceedings of the Encyclopedia of Parallel Computing, 2011

Spanning Tree, Minimum Weight.
Proceedings of the Encyclopedia of Parallel Computing, 2011

Graph Algorithms.
Proceedings of the Encyclopedia of Parallel Computing, 2011

Guest Editor's Introduction: Special Issue on High-Performance Computing with Accelerators.
IEEE Trans. Parallel Distrib. Syst., 2011

Algorithm Engineering Challenges in Multicore and Manycore Systems.
it - Information Technology, 2011

On the random access performance of Cell Broadband Engine with graph analysis application
CoRR, 2011

A Waterfall Model to Achieve Energy Efficient Tasks Mapping for Large Scale GPU Clusters.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

HiCOMB Introduction.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

Tracking Structure of Streaming Social Networks.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

Fundamental Questions in the Analysis of Large Graphs.
Proceedings of the Graph Algorithms in the Language of Linear Algebra, 2011

Large-Scale Network Analysis.
Proceedings of the Graph Algorithms in the Language of Linear Algebra, 2011

2010
Scalable Graph Exploration on Multicore Processors.
Proceedings of the Conference on High Performance Computing Networking, 2010

Evaluating Cell/B.E software cache for ClustalW.
Proceedings of the International Symposium on Circuits and Systems (ISCAS 2010), May 30, 2010

Message from the workshop chairs.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

Large scale complex network analysis using the hybrid combination of a MapReduce cluster and a highly multithreaded system.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

Massive streaming data analytics: A case study with clustering coefficients.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

A tile-based parallel Viterbi algorithm for biological sequence alignment on GPU with CUDA.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

Message from general chair.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

Massive Social Network Analysis: Mining Twitter for Social Good.
Proceedings of the 39th International Conference on Parallel Processing, 2010

Analyzing Massive Social Networks Using Multicore and Multithreaded Architectures.
Proceedings of the Facing the Multicore-Challenge, 2010

Combinatorial Algorithm Design on the Cell/B.E. Processor.
Proceedings of the Scientific Computing with Multicore and Accelerators., 2010

Designing Fast Fourier Transform for the IBM Cell Broadband Engine.
Proceedings of the Scientific Computing with Multicore and Accelerators., 2010

2009
Computing discrete transforms on the Cell Broadband Engine.
Parallel Computing, 2009

Faster FAST: multicore acceleration of streaming financial data.
Computer Science - R&D, 2009

GTfold: a scalable multicore code for RNA secondary structure prediction.
Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009

An efficient transactional memory algorithm for computing minimum spanning forest of sparse graphs.
Proceedings of the 14th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2009

A faster parallel algorithm and efficient multithreaded implementations for evaluating betweenness centrality on massive datasets.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

Compact graph representations and parallel connectivity algorithms for massive dynamic network analysis.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

Understanding the design trade-offs among current multicore systems for numerical computations.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

Generalizing k-Betweenness Centrality Using Short Paths and a Parallel Multithreaded Implementation.
Proceedings of the ICPP 2009, 2009

A Partition-Merge Based Cache-Conscious Parallel Sorting Algorithm for CMP with Shared Cache.
Proceedings of the ICPP 2009, 2009

Simulating Individual-Based Models of Epidemics in Hierarchical Networks.
Proceedings of the Computational Science, 2009

2008
Sorting Signed Permutations by Reversal (Reversal Distance).
Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

High Performance Algorithm Engineering for Large-scale Problems.
Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

Engineering Algorithms for Computational Biology.
Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

A graph-theoretic analysis of the human protein-interaction network using multicore parallel algorithms.
Parallel Computing, 2008

High-performance computational biology.
Parallel Computing, 2008

High performance MPEG-2 software decoder on the cell broadband engine.
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008

DOSA: design optimizer for scientific applications.
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008

SNAP, Small-world Network Analysis and Partitioning: An open-source parallel graph framework for the exploration of large-scale networks.
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008

Financial modeling on the cell broadband engine.
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008

Optimizing JPEG2000 Still Image Encoding on the Cell Broadband Engine.
Proceedings of the 2008 International Conference on Parallel Processing, 2008

On the Design of Fast Pseudo-Random Number Generators for the Cell Broadband Engine and an Application to Risk Analysis.
Proceedings of the 2008 International Conference on Parallel Processing, 2008

A Prediction Based CMP Cache Migration Policy.
Proceedings of the 10th IEEE International Conference on High Performance Computing and Communications, 2008

2007
Design of Multithreaded Algorithms for Combinatorial Problems.
Proceedings of the Handbook of Parallel Computing - Models, Algorithms and Applications., 2007

Efficient Parallel Graph Algorithms for Multicore and Multiprocessors.
Proceedings of the Handbook of Parallel Computing - Models, Algorithms and Applications., 2007

Dynamic Load Balancing in Distributed Systems in the Presence of Delays: A Regeneration-Theory Approach.
IEEE Trans. Parallel Distrib. Syst., 2007

High performance combinatorial algorithm design on the Cell Broadband Engine processor.
Parallel Computing, 2007

On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures.
J. Parallel Distrib. Comput., 2007

Approximating Betweenness Centrality.
Proceedings of the Algorithms and Models for the Web-Graph, 5th International Workshop, 2007

Techniques for Designing Efficient Parallel Graph Algorithms for SMPs and Multicore Processors.
Proceedings of the Parallel and Distributed Processing and Applications, 2007

Advanced Shortest Paths Algorithms on a Massively-Multithreaded Architecture.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

SWARM: A Parallel Programming Framework for Multicore Processors.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

On the Design and Analysis of Irregular Algorithms on the Cell Processor: A Case Study of List Ranking.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Petascale Computing for Large-Scale Graph Problems.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

FFTC: Fastest Fourier Transform for the IBM Cell Broadband Engine.
Proceedings of the High Performance Computing, 2007

Lecture on Progress toward Petascale Applications in Bioinformatics and Computational Biology.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

An Experimental Study of A Parallel Shortest Path Algorithm for Solving Large-Scale Graph Instances.
Proceedings of the Nine Workshop on Algorithm Engineering and Experiments, 2007

2006
Editorial: Special Section on High-Performance Computational Biology.
IEEE Trans. Parallel Distrib. Syst., 2006

Designing irregular parallel algorithms with mutual exclusion and lock-free protocols.
J. Parallel Distrib. Comput., 2006

Fast shared-memory algorithms for computing the minimum spanning forest of sparse graphs.
J. Parallel Distrib. Comput., 2006

Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions.
Advances in Computers, 2006

M11 - High-performance computing methods for computational genomics.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

Performance analysis of parallel programs via message-passing graph traversal.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

Parallel Algorithms for Evaluating Centrality Indices in Real-world Networks.
Proceedings of the 2006 International Conference on Parallel Processing (ICPP 2006), 2006

Designing Multithreaded Algorithms for Breadth-First Search and st-connectivity on the Cray MTA-2.
Proceedings of the 2006 International Conference on Parallel Processing (ICPP 2006), 2006

ExactMP: An Efficient Parallel Exact Solver for Phylogenetic Tree Reconstruction Using Maximum Parsimony.
Proceedings of the 2006 International Conference on Parallel Processing (ICPP 2006), 2006

Parallel Shortest Path Algorithms for Solving Large-Scale Instances.
Proceedings of the Shortest Path Problem, 2006

Parallel Computational Biology.
Proceedings of the Parallel Processing for Scientific Computing, 2006

2005
A fast, parallel spanning tree algorithm for symmetric multiprocessors (SMPs).
J. Parallel Distrib. Comput., 2005

High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology.
Proceedings of the Experimental and Efficient Algorithms, 4th InternationalWorkshop, 2005

An Experimental Study of Parallel Biconnected Components Algorithms on Symmetric Multiprocessors (SMPs).
Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005

On the Architectural Requirements for Efficient Execution of Graph Algorithms.
Proceedings of the 34th International Conference on Parallel Processing (ICPP 2005), 2005

Design and Implementation of the HPCS Graph Analysis Benchmark on Symmetric Multiprocessors.
Proceedings of the High Performance Computing, 2005

Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

An Empirical Analysis of Parallel Random Permutation Algorithms ON SMPs.
Proceedings of the ISCA 18th International Conference on Parallel and Distributed Computing Systems, 2005

A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic.
Proceedings of the ISCA 18th International Conference on Parallel and Distributed Computing Systems, 2005

2004
An improved, randomized algorithm for parallel selection with an experimental study.
J. Parallel Distrib. Comput., 2004

A Framework for Measuring Supercomputer Productivity.
IJHPCA, 2004

Special Issue: High Performance Computational Biology.
Concurrency - Practice and Experience, 2004

Computational biology and high-performance computing.
Commun. ACM, 2004

A Fast, Parallel Spanning Tree Algorithm for Symmetric Multiprocessors.
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004

A Novel FDTD Application Featuring OpenMP-MPI Hybrid Parallelization.
Proceedings of the 33rd International Conference on Parallel Processing (ICPP 2004), 2004

The Euler Tour Technique and Parallel Rooted Spanning Tree.
Proceedings of the 33rd International Conference on Parallel Processing (ICPP 2004), 2004

Lock-Free Parallel Algorithms: An Experimental Study.
Proceedings of the High Performance Computing, 2004

A Parallel State Assignment Algorithm for Finite State Machines.
Proceedings of the High Performance Computing, 2004

Topic 17: High Performance Bioinformatics.
Proceedings of the Euro-Par 2004 Parallel Processing, 2004

2003
Guest Editor's Introduction: Special issue on high-performance computational biology.
J. Parallel Distrib. Comput., 2003

2002
High-Performance Algorithm Engineering for Computational Phylogenetics.
The Journal of Supercomputing, 2002

Workshop Introduction.
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002

Evaluating Arithmetic Expressions Using Tree Contraction: A Fast and Scalable Parallel Implementation for Symmetric Multiprocessors (SMPs) (Extended Abstract).
Proceedings of the High Performance Computing, 2002

2001
A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study.
Journal of Computational Biology, 2001

Applications.
IJHPCA, 2001

Using PRAM Algorithms on a Uniform-Memory-Access Shared-Memory Architecture.
Proceedings of the Algorithm Engineering, 2001

A New Implmentation and Detailed Study of Breakpoint Analysis.
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

2000
Algorithm Engineering for Parallel Computation.
Proceedings of the Experimental Algorithmics, 2000

Tutorial A: Design and Analysis of High Performance Clusters.
Proceedings of the 2000 IEEE International Conference on Cluster Computing (CLUSTER 2000), November 28th, 2000

1999
A New, Architectural Paradigm for High-performance Computing.
Scalable Computing: Practice and Experience, 1999

SIMPLE: A Methodology for Programming High Performance Algorithms on Clusters of Symmetric Multiprocessors (SMPs).
J. Parallel Distrib. Comput., 1999

Design and Analysis of the Alliance/University of New Mexico Roadrunner Linux SMP SuperCluster.
Proceedings of the 1st International Workshop on Cluster Computing (IWCC '99), 1999

1998
A Randomized Parallel Sorting Algorithm with an Experimental Study.
J. Parallel Distrib. Comput., 1998

A New Deterministic Parallel Sorting Algorithm with an Experimental Evaluation.
ACM Journal of Experimental Algorithmics, 1998

1996
Parallel algorithms for image enhancement and segmentation by region growing, with an experimental study.
The Journal of Supercomputing, 1996

Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study.
J. Parallel Distrib. Comput., 1996

Practical Parallel Algorithms for Personalized Communication and Integer Sorting.
ACM Journal of Experimental Algorithmics, 1996

Parallel Algorithms for Personalized Communication and Sorting with an Experimental Study (Extended Abstract).
Proceedings of the 8th Annual ACM Symposium on Parallel Algorithms and Architectures, 1996

Practical Parallel Algorithms for Dynamic Data Redistribution, Median Finding, and Selection.
Proceedings of IPPS '96, 1996

1995
Scalable data parallel algorithms for texture synthesis using Gibbs random fields.
IEEE Trans. Image Processing, 1995

Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study (Extended Abstract).
Proceedings of the Fifth ACM SIGPLAN Symposium on Principles & Practice of Parallel Programming (PPOPP), 1995


  Loading...