Volker Brendel

According to our database, Volker Brendel authored at least 34 papers between 1994 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

SRAssembler: Selective Recursive local Assembly of homologous genomic regions.

Thomas W. McCarthy, Hsien-chao Chou, Volker P. Brendel

BMC Bioinform., 2019

2012

TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction.

Erin L. Doyle, Nicholas J. Booher, Daniel S. Standage, Daniel F. Voytas, Volker P. Brendel, John K. VanDyk, Adam J. Bogdanove

Nucleic Acids Res., 2012

ParsEval: parallel comparison and analysis of gene structure annotations.

Daniel S. Standage, Volker P. Brendel

BMC Bioinform., 2012

2011

The BioExtract Server: a web-based bioinformatic workflow platform.

Carol Lushbough, Douglas M. Jennewein, Volker Brendel

Nucleic Acids Res., 2011

2010

BioExtract Server - An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data.

Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

2009

MaizeGDB becomes 'sequence-centric'.

Taner Z. Sen, Carson M. Andorf, Mary L. Schaeffer, Lisa C. Harper, Michael E. Sparks, Jon Duvick, Volker P. Brendel, Ethalinda K. S. Cannon, Darwin A. Campbell, Carolyn J. Lawrence

Database J. Biol. Databases Curation, 2009

Common introns within orthologous genes: software and application to plants.

Matthew D. Wilkerson, Yuanbin Ru, Volker Brendel

Briefings Bioinform., 2009

2008

PlantGDB: a resource for comparative plant genomics.

Jon Duvick, Ann Fu, Usha Muppirala, Mukul Sabharwal, Matthew D. Wilkerson, Carolyn J. Lawrence, Carol Lushbough, Volker Brendel

Nucleic Acids Res., 2008

Implementing bioinformatic workflows within the BioExtract Server.

Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel

Int. J. Comput. Biol. Drug Des., 2008

Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment.

Ankit Agrawal, Volker Brendel, Xiaoqiu Huang

Int. J. Comput. Biol. Drug Des., 2008

MetWAMer: eukaryotic translation initiation site prediction.

Michael E. Sparks, Volker Brendel

BMC Bioinform., 2008

Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences.

Ankit Agrawal, Volker Brendel, Xiaoqiu Huang

Proceedings of the Bioinformatics Research and Applications, 2008

TableMaker: An ad hoc Query Tool for Relational Databases.

Carol Lushbough, Jon Duvick, Qunfeng Dong, Douglas M. Jennewein, Joe Reynoldson, Volker Brendel

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

An Overview of the BioExtract Server - a Distributed, Web Based Application for Bioinformatic Analysis.

Carol Lushbough, Volker Brendel

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

2007

<i>Tracembler </i>- software for <i>in-silico </i>chromosome walking in unassembled genomes.

Qunfeng Dong, Matthew D. Wilkerson, Volker Brendel

BMC Bioinform., 2007

Markov Model Variants for Appraisal of Coding Potential in Plant DNA.

Michael E. Sparks, Volker Brendel, Karin S. Dorman

Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007

Creating Bioinformatic Workflows within the BioExtract Server.

Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

2005

Engineering a software tool for gene structure prediction in higher organisms.

Gordon Gremme, Volker Brendel, Michael E. Sparks, Stefan Kurtz

Inf. Softw. Technol., 2005

Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants.

Michael E. Sparks, Volker Brendel

Bioinform., 2005

SynBrowse: a synteny browser for comparative sequence analysis.

Xiaokang Pan, Lincoln Stein, Volker Brendel

Bioinform., 2005

2004

MaizeGDB, the community database for maize genetics and genomics.

Carolyn J. Lawrence, Qunfeng Dong, Mary L. Polacco, Trent E. Seigfried, Volker Brendel

Nucleic Acids Res., 2004

PlantGDB, plant genome database and analysis tools.

Qunfeng Dong, Shannon D. Schlueter, Volker Brendel

Nucleic Acids Res., 2004

Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

Volker Brendel, Liqun Xing, Wei Zhu

Bioinform., 2004

2003

Space and time efficient parallel algorithms and software for EST clustering.

Anantharaman Kalyanaraman, Srinivas Aluru, Volker Brendel, Suresh C. Kothari

IEEE Trans. Parallel Distributed Syst., 2003

GeneSeqer add PlantGDB: gene structure prediction in plant genomes.

Shannon D. Schlueter, Qunfeng Dong, Volker Brendel

Nucleic Acids Res., 2003

ZmDB, an integrated database for maize genome research.

Qunfeng Dong, Laura Roy, Michael Freeling, Virginia Walbot, Volker Brendel

Nucleic Acids Res., 2003

2002

Gene structure identification with MyGV using cDNA evidence and protein homologs to improve ab initio predictions.

Wei Zhu, Volker Brendel

Bioinform., 2002

Integration of Data Management and Analysis for Genome Research.

Volker Brendel

Proceedings of the 32. Jahrestagung der Gesellschaft für Informatik, Informatik bewegt, INFORMATIK 2002, Dortmund, Germany, September 30, 2002

2001

Multi-query sequence BLAST output examination with MuSeqBox.

Liqun Xing, Volker Brendel

Bioinform., 2001

2000

Gene discovery using the maize genome database ZmDB.

Xiaowu Gai, Shailesh Lal, Liqun Xing, Volker Brendel, Virginia Walbot

Nucleic Acids Res., 2000

Optimal spliced alignment of homologous cDNA to a genomic DNA template.

Jonathan Usuka, Wei Zhu, Volker Brendel

Bioinform., 2000

1998

GeneGenerator - a flexible algorithm for gene prediction and its application to maize sequences.

Jürgen Kleffe, Klaus Hermann, Wolfgang Vahrson, Burghardt Wittig, Volker Brendel

Bioinform., 1998

1997

GeneGenerator- a flexible algorfthm for gene prediction.

Jürgen Kleffe, Klaus Hermann, Wolfgang Vahrson, Burghardt Wittig, Volker Brendel

Proceedings of the German Conference on Bioinformatics, 1997

1994

Applications of Statistical Criteria in Protein Sequence Analysis: Case Study of Yeast RNA Polymerase II Subunits.

Volker Brendel, Samuel Karlin

Comput. Chem., 1994