Anantharaman Kalyanaraman

According to our database1, Anantharaman Kalyanaraman authored at least 92 papers between 2002 and 2022.

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Bibliography

2022
Towards scaling community detection on distributed-memory heterogeneous systems.
Parallel Comput., 2022

High-Performance and Energy-Efficient 3D Manycore GPU Architecture for Accelerating Graph Analytics.
ACM J. Emerg. Technol. Comput. Syst., 2022

2021
PaKman: A Scalable Algorithm for Generating Genomic Contigs on Distributed Memory Machines.
IEEE Trans. Parallel Distributed Syst., 2021

Delta-Screening: A Fast and Efficient Technique to Update Communities in Dynamic Graphs.
IEEE Trans. Netw. Sci. Eng., 2021

Hyppo-X: A Scalable Exploratory Framework for Analyzing Complex Phenomics Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Single-node partitioned-memory for huge graph analytics: cost and performance trade-offs.
Proceedings of the SC '21: The International Conference for High Performance Computing, Networking, Storage and Analysis, St. Louis, Missouri, USA, November 14, 2021

Scalable topological data analysis for life science applications.
Proceedings of the CF '21: Computing Frontiers Conference, 2021

Pheno-mapper: an interactive toolbox for the visual exploration of phenomics data.
Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021

2020
Preempt: scalable epidemic interventions using submodular optimization on multi-GPU systems.
Proceedings of the International Conference for High Performance Computing, 2020

Vertex Reordering for Real-World Graphs and Applications: An Empirical Evaluation.
Proceedings of the IEEE International Symposium on Workload Characterization, 2020

cuRipples: influence maximization on multi-GPU systems.
Proceedings of the ICS '20: 2020 International Conference on Supercomputing, 2020

2019
Efficient Detection of Communities in Biological Bipartite Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

FastEtch: A Fast Sketch-Based Assembler for Genomes.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Interesting paths in the mapper complex.
J. Comput. Geom., 2019

NoC-enabled software/hardware co-design framework for accelerating <i>k-mer</i> counting.
Proceedings of the 13th IEEE/ACM International Symposium on Networks-on-Chip, 2019

Introduction to HiCOMB 2019.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2019

PaKman: Scalable Assembly of Large Genomes on Distributed Memory Machines.
Proceedings of the 2019 IEEE International Parallel and Distributed Processing Symposium, 2019

Exploring MPI Communication Models for Graph Applications Using Graph Matching as a Case Study.
Proceedings of the 2019 IEEE International Parallel and Distributed Processing Symposium, 2019

Scaling and Quality of Modularity Optimization Methods for Graph Clustering.
Proceedings of the 2019 IEEE High Performance Extreme Computing Conference, 2019

A Brief Survey of Algorithms, Architectures, and Challenges toward Extreme-scale Graph Analytics.
Proceedings of the Design, Automation & Test in Europe Conference & Exhibition, 2019

Fast and Scalable Implementations of Influence Maximization Algorithms.
Proceedings of the 2019 IEEE International Conference on Cluster Computing, 2019

A Visual Analytics Framework for Analysis of Patient Trajectories.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

A fast and efficient incremental approach toward dynamic community detection.
Proceedings of the ASONAM '19: International Conference on Advances in Social Networks Analysis and Mining, 2019

2018
Guest Editorial: Advances in Parallel Graph Processing: Algorithms, Architectures, and Application Frameworks.
IEEE Trans. Multi Scale Comput. Syst., 2018

Alignment-free clustering of large data sets of unannotated protein conserved regions using minhashing.
BMC Bioinform., 2018

MiniVite: A Graph Analytics Benchmarking Tool for Massively Parallel Systems.
Proceedings of the 2018 IEEE/ACM Performance Modeling, 2018

Distributed Louvain Algorithm for Graph Community Detection.
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium, 2018

Scalable Distributed Memory Community Detection Using Vite.
Proceedings of the 2018 IEEE High Performance Extreme Computing Conference, 2018

Detecting Divergent Subpopulations in Phenomics Data using Interesting Flares.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017
Algorithms for Balanced Graph Colorings with Applications in Parallel Computing.
IEEE Trans. Parallel Distributed Syst., 2017

Interesting Paths in the Mapper.
CoRR, 2017

Toward A Scalable Exploratory Framework for Complex High-Dimensional Phenomics Data.
CoRR, 2017

Scalable static and dynamic community detection using Grappolo.
Proceedings of the 2017 IEEE High Performance Extreme Computing Conference, 2017

BigDF Introduction.
Proceedings of the 24th IEEE International Conference on High Performance Computing Workshops, 2017

Approximate Computing Techniques for Iterative Graph Algorithms.
Proceedings of the 24th IEEE International Conference on High Performance Computing, 2017

Accelerating Graph Community Detection with Approximate Updates via an Energy-Efficient NoC.
Proceedings of the 54th Annual Design Automation Conference, 2017

2016
High-Performance and Energy-Efficient Network-on-Chip Architectures for Graph Analytics.
ACM Trans. Embed. Comput. Syst., 2016

Fast Uncovering of Graph Communities on a Chip: Toward Scalable Community Detection on Multicore and Manycore Platforms.
Found. Trends Electron. Des. Autom., 2016

HiCOMB Introduction and Committees.
Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

On the Impact of Widening Vector Registers on Sequence Alignment.
Proceedings of the 45th International Conference on Parallel Processing, 2016

Detecting Communities in Biological Bipartite Networks.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

Characterizing the Role of Environment on Phenotypic Traits using Topological Data Analysis.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

A Fast Sketch-based Assembler for Genomes.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2015
Parallel heuristics for scalable community detection.
Parallel Comput., 2015

A work stealing based approach for enabling scalable optimal sequence homology detection.
J. Parallel Distributed Comput., 2015

Balanced Coloring for Parallel Computing Applications.
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium, 2015

HiCOMB 2015 Keynote and Invited Talks.
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015

ParLearning Keynotes.
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015

Introduction to HiPC Workshop 2.
Proceedings of the 22nd IEEE International Conference on High Performance Computing Workshops, 2015

On-chip network-enabled many-core architectures for computational biology applications.
Proceedings of the 2015 Design, Automation & Test in Europe Conference & Exhibition, 2015

High performance and energy efficient wireless NoC-enabled multicore architectures for graph analytics.
Proceedings of the 2015 International Conference on Compilers, 2015

An alignment-free approach to cluster proteins using frequency of conserved k-mers.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014
Parallel algorithms for clustering biological graphs on distributed and shared memory architectures.
Int. J. High Perform. Comput. Netw., 2014

Wireless NoC Platforms With Dynamic Task Allocation for Maximum Likelihood Phylogeny Reconstruction.
IEEE Des. Test, 2014

Hardware Accelerators in Computational Biology: Application, Potential, and Challenges.
IEEE Des. Test, 2014

Parallel Heuristics for Scalable Community Detection.
Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

HiCOMB Keynote and Invited Talks.
Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

Design and Implementation of Kepler Workflows for BioEarth.
Proceedings of the International Conference on Computational Science, 2014

Scaling graph community detection on the Tilera many-core architecture.
Proceedings of the 21st International Conference on High Performance Computing, 2014

2013
High-throughput, energy-efficient network-on-chip-based hardware accelerators.
Sustain. Comput. Informatics Syst., 2013

GPU-Accelerated Protein Family Identification for Metagenomics.
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

Network-on-Chip with Long-Range Wireless Links for High-Throughput Scientific Computation.
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

Empirical Analysis of Space-Filling Curves for Scientific Computing Applications.
Proceedings of the 42nd International Conference on Parallel Processing, 2013

Scalable heuristics for clustering biological graphs.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

BigLS - The 1<sup>st</sup> International Workshop on Big Data in Life Sciences.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

2012
pGraph: Efficient Parallel Construction of Large-Scale Protein Sequence Homology Graphs.
IEEE Trans. Parallel Distributed Syst., 2012

On-Chip Network-Enabled Multicore Platforms Targeting Maximum Likelihood Phylogeny Reconstruction.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2012

NoC-Based Hardware Accelerator for Breakpoint Phylogeny.
IEEE Trans. Computers, 2012

Proteotyping of Microbial Communities by Optimization of Tandem Mass Spectrometry Data Interpretation.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Towards scalable optimal sequence homology detection.
Proceedings of the 19th International Conference on High Performance Computing, 2012

2011
Genome Assembly.
Proceedings of the Encyclopedia of Parallel Computing, 2011

MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification.
Bioinform., 2011

An OpenMP algorithm and implementation for clustering biological graphs.
Proceedings of the first workshop on Irregular applications: architectures and algorithm, 2011

Accelerating Maximum Likelihood Based Phylogenetic Kernels Using Network-on-Chip.
Proceedings of the 23rd International Symposium on Computer Architecture and High Performance Computing, 2011

HiCOMB Introduction.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

2010
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment.
IEEE Trans. Computers, 2010

Hardware accelerators for biocomputing: A survey.
Proceedings of the International Symposium on Circuits and Systems (ISCAS 2010), May 30, 2010

A Scalable Parallel Algorithm for Large-Scale Protein Sequence Homology Detection.
Proceedings of the 39th International Conference on Parallel Processing, 2010

An optimized NoC architecture for accelerating TSP kernels in breakpoint median problem.
Proceedings of the 21st IEEE International Conference on Application-specific Systems Architectures and Processors, 2010

2009
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data.
Proceedings of the ICPPW 2009, 2009

DNAjig: A New Approach for Building DNA Nanostructures.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

2008
An efficient parallel approach for identifying protein families in large-scale metagenomic data sets.
Proceedings of the ACM/IEEE Conference on High Performance Computing, 2008

An information theoretic approach for the discovery of irregular and repetitive patterns in genomic data.
Proceedings of the 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2008

2007
Assembling genomes on large-scale parallel computers.
J. Parallel Distributed Comput., 2007

Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Massively parallel expressed sequence tag clustering.
Proceedings of the ISCA 20th International Conference on Parallel and Distributed Computing Systems, 2007

2006
Efficient Algorithms and Software for Detection of Full-length Ltr Retrotransposons.
J. Bioinform. Comput. Biol., 2006

M11 - High-performance computing methods for computational genomics.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

2004
Space-Conserving Optimal DNA-Protein Alignment .
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003
Space and time efficient parallel algorithms and software for EST clustering.
IEEE Trans. Parallel Distributed Syst., 2003

2002
Parallel EST Clustering.
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002

Space and Time Efficient Parallel Algorithms and Software for EST Clustering.
Proceedings of the 31st International Conference on Parallel Processing (ICPP 2002), 2002


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