Yue Yu

According to our database, Yue Yu authored at least 23 papers between 2015 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Launching Insights: A Pilot Study on Leveraging Real-World Observational Data from the Mayo Clinic Platform to Advance Clinical Research.

Yue Yu, Xinyue Hu, Sivaraman Rajaganapathy, Jingna Feng, Ahmed Abdelhameed, Xiaodi Li, Jianfu Li, Ken Liu, Liu Yang, Nilufer Taner, Phil Fiero, Soulmaz Boroumand, Richard Larsen, Maneesh Goyal, Clark Otley, Nansu Zong, John Halamka, Cui Tao

CoRR, April, 2025

Advancing efficacy prediction for electronic health records based emulated trials in repurposing heart failure therapies.

Nansu Zong, Shaika Chowdhury, Shibo Zhou, Sivaraman Rajaganapathy, Yue Yu, Liewei Wang, Qiying Dai, Pengyang Li, Xiaoke Liu, Suzette J. Bielinski, Jun Chen, Yongbin Chen, James R. Cerhan

npj Digit. Medicine, 2025

2024

Stratifying heart failure patients with graph neural network and transformer using Electronic Health Records to optimize drug response prediction.

Shaika Chowdhury, Yongbin Chen, Pengyang Li, Sivaraman Rajaganapathy, Andrew Wen, Xiao Ma, Qiying Dai, Yue Yu, Sunyang Fu, Xiaoqian Jiang, Zhe He, Sunghwan Sohn, Xiaoke Liu, Suzette J. Bielinski, Alanna M. Chamberlain, James R. Cerhan, Nansu Zong

J. Am. Medical Informatics Assoc., 2024

2023

FHIR-Ontop-OMOP: Querying OMOP clinical databases as FHIR-compliant Clinical Knowledge Graphs.

Guohui Xiao, Emily R. Pfaff, Eric Prud'hommeaux, David Booth, Deepak K. Sharma, Nan Huo, Yue Yu, Nansu Zong, Kathryn J. Ruddy, Christopher G. Chute, Guoqian Jiang

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Characterizing the Users of Patient Portal Messaging: A Single Institutional Cohort Study.

Ming Huang, Aditya Khurana, George M. Mastorakos, Jiawei Zhou, Nansu Zong, Yue Yu, Julie E. Prigge, Christi A. Patten, Hongfang Liu, Brian Costello

Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

Evaluating Drug Effectiveness for Antihypertensives in Heart Failure Prognosis: Leveraging Composite Clinical Endpoints and Biomarkers from Electronic Health Records.

Shaika Chowdhury, Yongbin Chen, Xiao Ma, Qiying Dai, Yue Yu, Nansu Zong

Proceedings of the 14th ACM International Conference on Bioinformatics, 2023

2022

Computational drug repurposing based on electronic health records: a scoping review.

Nansu Zong, Andrew Wen, Sungrim Moon, Sunyang Fu, Liwei Wang, Yiqing Zhao, Yue Yu, Ming Huang, Yanshan Wang, Gang Zheng, Michelle M. Mielke, James R. Cerhan, Hongfang Liu

npj Digit. Medicine, 2022

Developing an ETL tool for converting the PCORnet CDM into the OMOP CDM to facilitate the COVID-19 data integration.

Yue Yu, Nansu Zong, Andrew Wen, Sijia Liu, Daniel J. Stone, David Knaack, Alanna M. Chamberlain, Emily R. Pfaff, Davera Gabriel, Christopher G. Chute, Nilay Shah, Guoqian Jiang

J. Biomed. Informatics, 2022

FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model.

Guohui Xiao, Emily R. Pfaff, Eric Prud'hommeaux, David Booth, Deepak K. Sharma, Nan Huo, Yue Yu, Nansu Zong, Kathryn J. Ruddy, Christopher G. Chute, Guoqian Jiang

J. Biomed. Informatics, 2022

BETA: a comprehensive benchmark for computational drug-target prediction.

Nansu Zong, Ning Li, Andrew Wen, Victoria Ngo, Yue Yu, Ming Huang, Shaika Chowdhury, Chao Jiang, Sunyang Fu, Richard Weinshilboum, Guoqian Jiang, Lawrence Hunter, Hongfang Liu

Briefings Bioinform., 2022

A Comparative Study on the Capability of Real-World Antineoplastic Drug Data Collection by CanMED, ATC and HemOnc.

Yue Yu, Kathryn J. Ruddy, Nan Huo, Nansu Zong, Deirdre Pachman, Christopher G. Chute, Emily R. Pfaff, Andrea Cheville, Guoqian Jiang

Proceedings of the AMIA 2022, 2022

Modeling a Cancer Symptom Control Domain Using HL7 FHIR: Applicability of the Minimal Common Oncology Data Elements (mCODE).

Nan Huo, Yue Yu, Nansu Zong, Andrea Cheville, Claude Nanjo, Eric Prud'hommeaux, Deirdre Pachman, Guohui Xiao, Emily R. Pfaff, Christopher G. Chute, Guoqian Jiang, Kathryn J. Ruddy

Proceedings of the AMIA 2022, 2022

2021

Feasibility of capturing real-world data from health information technology systems at multiple centers to assess cardiac ablation device outcomes: A fit-for-purpose informatics analysis report.

Guoqian Jiang, Sanket S. Dhruva, Jiajing Chen, Wade L. Schulz, Amit A. Doshi, Peter A. Noseworthy, Shumin Zhang, Yue Yu, Hobart Patrick Young, Eric Brandt, Keondae R. Ervin, Nilay D. Shah, Joseph S. Ross, Paul Coplan, Joseph P. Drozda

J. Am. Medical Informatics Assoc., 2021

Modeling cancer clinical trials using HL7 FHIR to support downstream applications: A case study with colorectal cancer data.

Nansu Zong, Daniel J. Stone, Deepak K. Sharma, Andrew Wen, Chen Wang, Yue Yu, Ming Huang, Sijia Liu, Hongfang Liu, Qian Shi, Guoqian Jiang

Int. J. Medical Informatics, 2021

Drug-target prediction utilizing heterogeneous bio-linked network embeddings.

Nansu Zong, Rachael Sze Nga Wong, Yue Yu, Andrew Wen, Ming Huang, Ning Li

Briefings Bioinform., 2021

Disparity analysis of patient portal messaging use for COVID-19 in urban versus rural locality.

Ming Huang, Andrew Wen, Huan He, Liwei Wang, Sijia Liu, Yanshan Wang, Nansu Zong, Yue Yu, Julie E. Prigge, Brian Costello, Nilay D. Shah, Henry Ting, Chyke Doubeni, Jungwei Fan, Hongfang Liu, Christi A. Patten

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Multi-site Evaluation of Longitudinal Changes in Ejection Fraction in Heart Failure Patients Through Data-driven Phenotyping.

Prakash Adekkanattu, Jennifer A. Pacheco, Joseph Kabariti, Daniel J. Stone, Yue Yu, Parag Goyal, Faraz S. Ahmad, Guoqian Jiang, Yuan Luo, Luke V. Rasmussen, Pascal S. Brandt, Zhenxing Xu, Jie Xu, Fei Wang, Natalie C. Benda, Thomas R. Campion Jr., Jyotishman Pathak

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2019

ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model.

Yue Yu, Kathryn J. Ruddy, Na Hong, Shintaro Tsuji, Andrew Wen, Nilay D. Shah, Guoqian Jiang

J. Biomed. Informatics, 2019

Augmenting Medical Device Evaluation Using a Reusable Unique Device Identifier Interoperability Solution Based on the OHDSI Common Data Model.

Guoqian Jiang, Yue Yu, Paul R. Kingsbury, Nilay D. Shah

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

2018

Preliminary exploration of survival analysis using the OHDSI common data model: a case study of intrahepatic cholangiocarcinoma.

Na Hong, Ning Zhang, Huawei Wu, Shanshan Lu, Yue Yu, Li Hou, Yinying Lu, Hongfang Liu, Guoqian Jiang

BMC Medical Informatics Decis. Mak., 2018

Developing A Standards-based Signal Detection and Validation Framework of Immune-related Adverse Events Using the OHDSI Common Data Model.

Yue Yu, Kathryn J. Ruddy, Shintaro Tsuji, Na Hong, Nilay D. Shah, Guoqian Jiang

Proceedings of the AMIA 2018, 2018

2016

A computational framework for converting textual clinical diagnostic criteria into the quality data model.

Na Hong, Dingcheng Li, Yue Yu, Qiongying Xiu, Hongfang Liu, Guoqian Jiang

J. Biomed. Informatics, 2016

2015

Representing Clinical Diagnostic Criteria in Quality Data Model Using Natural Language Processing.

Na Hong, Dingcheng Li, Yue Yu, Hongfang Liu, Christopher G. Chute, Guoqian Jiang

Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015