Emily R. Pfaff

Orcid: 0000-0002-6840-9756

According to our database1, Emily R. Pfaff authored at least 32 papers between 2016 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).
J. Am. Medical Informatics Assoc., November, 2023

De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the <i>All of Us</i> data repository.
J. Am. Medical Informatics Assoc., June, 2023

Clinical encounter heterogeneity and methods for resolving in networked EHR data: a study from N3C and RECOVER programs.
J. Am. Medical Informatics Assoc., 2023

FHIR-Ontop-OMOP: Querying OMOP clinical databases as FHIR-compliant Clinical Knowledge Graphs.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

2022
International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortality.
npj Digit. Medicine, 2022

Developing an ETL tool for converting the PCORnet CDM into the OMOP CDM to facilitate the COVID-19 data integration.
J. Biomed. Informatics, 2022

FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model.
J. Biomed. Informatics, 2022

Supporting research, protecting data: one institution's approach to clinical data warehouse governance.
J. Am. Medical Informatics Assoc., 2022

Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C).
J. Am. Medical Informatics Assoc., 2022

Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative.
J. Am. Medical Informatics Assoc., 2022

Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset.
J. Am. Medical Informatics Assoc., 2022

Leveraging Open Electronic Health Record Data and Environmental Exposures Data to Derive Insights Into Rare Pulmonary Disease.
Frontiers Artif. Intell., 2022

Implementing a New FHIR RDF Specification for Semantic Clinical Data Using a JSON-LD-based Approach.
Proceedings of the 13th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2022

A Comparative Study on the Capability of Real-World Antineoplastic Drug Data Collection by CanMED, ATC and HemOnc.
Proceedings of the AMIA 2022, 2022

Relational FHIR: Converting FHIR's Hierarchal Schema.
Proceedings of the AMIA 2022, 2022

Modeling a Cancer Symptom Control Domain Using HL7 FHIR: Applicability of the Minimal Common Oncology Data Elements (mCODE).
Proceedings of the AMIA 2022, 2022

HIPAA Safe Harbor (HuSH) Common Data Models for Education.
Proceedings of the AMIA 2022, 2022

Maximizing Interoperability, Enriching EHR Data: Transforming HL7 FHIR Data to RDF Using the FHIR RDF Playground.
Proceedings of the AMIA 2022, 2022

CAMP FHIR: Clinical Asset Mapping Program for FHIR.
Proceedings of the AMIA 2022, 2022

2021
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.
J. Am. Medical Informatics Assoc., 2021

An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C).
CoRR, 2021

Enabling Longitudinal Exploratory Analysis of Clinical COVID Data.
Proceedings of the IEEE Workshop on Visual Analytics in Healthcare, 2021

National COVID Cohort Collaborative (N3C) Case-control Buddies.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020
FHIR PIT: an open software application for spatiotemporal integration of clinical data and environmental exposures data.
BMC Medical Informatics Decis. Mak., 2020

Utilizing Encrypted Hashes to Link Patient Cohorts via Streamlined SAS Programs.
Proceedings of the AMIA 2020, 2020

2019
Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery.
npj Digit. Medicine, 2019

Sex, obesity, diabetes, and exposure to particulate matter among patients with severe asthma: Scientific insights from a comparative analysis of open clinical data sources during a five-day hackathon.
J. Biomed. Informatics, 2019

Recruiting for a pragmatic trial using the electronic health record and patient portal: successes and lessons learned.
J. Am. Medical Informatics Assoc., 2019

A novel approach for exposing and sharing clinical data: the Translator Integrated Clinical and Environmental Exposures Service.
J. Am. Medical Informatics Assoc., 2019

SMOREs : Synergistic Medication Organizer for RxNorm and Expansions, a Tool For Improving Semantic Relationships of Institutional Medications to Standardized Ontologies.
Proceedings of the AMIA 2019, 2019

2018
FDTool: a Python application to mine for functional dependencies and candidate keys in tabular data.
F1000Research, 2018

2016
An efficient approach for surveillance of childhood diabetes by type derived from electronic health record data: the SEARCH for Diabetes in Youth Study.
J. Am. Medical Informatics Assoc., 2016


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