Zhe He

Orcid: 0000-0003-3608-0244

Affiliations:
  • Florida State University, School of Information, Tallahassee, FL, USA (since 2015)
  • Columbia University, Biomedical Informatics, New York, NY, USA (since 2014)
  • New Jersey Institute of Technology, Newark, NJ, USA (PhD 2014)


According to our database1, Zhe He authored at least 95 papers between 2012 and 2024.

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Bibliography

2024
Quality of Answers of Generative Large Language Models vs Peer Patients for Interpreting Lab Test Results for Lay Patients: Evaluation Study.
CoRR, 2024

2023
Improving Primary Healthcare Workflow Using Extreme Summarization of Scientific Literature Based on Generative AI.
CoRR, 2023

Zero-shot Learning with Minimum Instruction to Extract Social Determinants and Family History from Clinical Notes using GPT Model.
Proceedings of the IEEE International Conference on Big Data, 2023

Parsing Clinical Trial Eligibility Criteria for Cohort Query by a Multi-Input Multi-Output Sequence Labeling Model.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Can Attention Be Used to Explain EHR-Based Mortality Prediction Tasks: A Case Study on Hemorrhagic Stroke.
Proceedings of the 14th ACM International Conference on Bioinformatics, 2023

2022
A Machine-Learning Based Approach for Predicting Older Adults' Adherence to Technology-Based Cognitive Training.
Inf. Process. Manag., 2022

Temporal Subtyping of Alzheimer's Disease Using Medical Conditions Preceding Alzheimer's Disease Onset in Electronic Health Records.
CoRR, 2022

Classifying Drug Ratings Using User Reviews with Transformer-Based Language Models.
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Using Twitter Data Analysis to Understand the Perceptions, Awareness, and Barriers to the Wide Use of Pre-Exposure Prophylaxis in the United States.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
Exploring the feasibility of using real-world data from a large clinical data research network to simulate clinical trials of Alzheimer's disease.
npj Digit. Medicine, 2021

How do mothers exchange parenting-related information in online communities? A meta-synthesis.
Comput. Hum. Behav., 2021

Pregnancy-Related Information Seeking in Online Health Communities: A Qualitative Study.
Proceedings of the Diversity, Divergence, Dialogue, 2021

Identification of Dietary Supplement Use from Electronic Health Records Using Transformer-based Language Models.
Proceedings of the 9th IEEE International Conference on Healthcare Informatics, 2021

Transformer-based named entity recognition for parsing clinical trial eligibility criteria.
Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021

Assessing the Use of Prescription Drugs in Obese Respondents in the National Health and Nutrition Examination Survey.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020
A deep learning approach for identifying cancer survivors living with post-traumatic stress disorder on Twitter.
BMC Medical Informatics Decis. Mak., 2020

Selected articles from the Fourth International Workshop on Semantics-Powered Data Mining and Analytics (SEPDA 2019).
BMC Medical Informatics Decis. Mak., 2020

A review of auditing techniques for the Unified Medical Language System.
J. Am. Medical Informatics Assoc., 2020

Explainable artificial intelligence models using real-world electronic health record data: a systematic scoping review.
J. Am. Medical Informatics Assoc., 2020

DeepConsensus: Consensus-based Interpretable Deep Neural Networks with Application to Mortality Prediction.
Proceedings of the 2020 International Joint Conference on Neural Networks, 2020

Attention Mechanism with BERT for Content Annotation and Categorization of Pregnancy-Related Questions on a Community Q&A Site.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Retrieving Lab Test Related Questions from Social Q&A Sites by Combining Shallow Features and Deep Representations.
Proceedings of the AMIA 2020, 2020

Using Real-World Data to Rationalize Clinical Trials Eligibility Criteria: a case study on Alzheimer's Disease and Donepezil.
Proceedings of the AMIA 2020, 2020

Deep Learning Approach to Parse Eligibility Criteria in Dietary Supplements Clinical Trials Following OMOP Common Data Model.
Proceedings of the AMIA 2020, 2020

2019
ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design.
BMC Medical Informatics Decis. Mak., 2019

Selected articles from the Third International Workshop on Semantics-Powered Data Analytics (SEPDA 2018).
BMC Medical Informatics Decis. Mak., 2019

Alternative classification of identical concepts in different terminologies: Different ways to view the world.
J. Biomed. Informatics, 2019

Analyzing Social Media Data to Understand Consumers' Information Needs on Dietary Supplements.
CoRR, 2019

Interpretable Deep Neural Networks for Patient Mortality Prediction: A Consensus-based Approach.
CoRR, 2019

Biomedical word sense disambiguation with bidirectional long short-term memory and attention-based neural networks.
BMC Bioinform., 2019

Extracting chemical-protein interactions from literature using sentence structure analysis and feature engineering.
Database J. Biol. Databases Curation, 2019

Using Deep Neural Network to Identify Cancer Survivors Living with Post-Traumatic Stress Disorder on Social Media.
Proceedings of the 4th International Workshop on Semantics-Powered Data Mining and Analytics co-located with the 18th International Semantic Web Conference (ISWC 2019), 2019

Making Sense of Clinical Laboratory Results: An Analysis of Questions and Replies in a Social Q&A Community.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Understanding Patient Information Needs About Their Clinical Laboratory Results: A Study of Social Q&A Site.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Analyzing Social Media Data to Understand Consumer Information Needs on Dietary Supplements.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Enhancing Prediction Models for One-Year Mortality in Patients with Acute Myocardial Infarction and Post Myocardial Infarction Syndrome.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Understanding Perceptions and Attitudes in Breast Cancer Discussions on Twitter.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Identification of Cancer Survivors Living with PTSD on Social Media.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Improving Patient Participation in Cancer Clinical Trials: A Qualitative Analysis of HSRProj & RePORTER.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Exploring the Discrepancies in Actual and Perceived Benefits of Dietary Supplements Among Obese Patients.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Multivariate Multi-step Deep Learning Time Series Approach in Forecasting Parkinson's Disease Future Severity Progression.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

Contextualizing Consumer Health Information Seeking.
Proceedings of the AMIA 2019, 2019

Assessing the Validity of a a priori Patient-Trial Generalizability Score using Real-world Data from a Large Clinical Data Research Network: A Colorectal Cancer Clinical Trial Case Study.
Proceedings of the AMIA 2019, 2019

2018
Natural Language Processing Empowered Mobile Computing.
Wirel. Commun. Mob. Comput., 2018

OC-2-KB: integrating crowdsourcing into an obesity and cancer knowledge base curation system.
BMC Medical Informatics Decis. Mak., 2018

Introduction: selected extended articles from the 2nd International Workshop on Semantics-Powered Data Analytics (SEPDA 2017).
BMC Medical Informatics Decis. Mak., 2018

Correction to: Evaluating semantic relations in neural word embeddings with biomedical and general domain knowledge bases.
BMC Medical Informatics Decis. Mak., 2018

Evaluating semantic relations in neural word embeddings with biomedical and general domain knowledge bases.
BMC Medical Informatics Decis. Mak., 2018

Assessing the practice of biomedical ontology evaluation: Gaps and opportunities.
J. Biomed. Informatics, 2018

Building Computational Models to Predict One-Year Mortality in ICU Patients with Acute Myocardial Infarction and Post Myocardial Infarction Syndrome.
CoRR, 2018

Patient-Centered Strategies to Increase Participation in Cancer Clinical Trials.
Proceedings of the IEEE International Conference on Healthcare Informatics, 2018

Prototyping an Interactive Visualization of Dietary Supplement Knowledge Graph.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Layered Multistep Bidirectional Long Short-Term Memory Networks for Biomedical Word Sense Disambiguation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Extended Analysis of Topological-Pattern-Based Ontology Enrichment.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Computable Eligibility Criteria through Ontology-driven Data Access: A Case Study of Hepatitis C Virus Trials.
Proceedings of the AMIA 2018, 2018

Leveraging Horizontal Density Differences between Ontologies to Identify Missing Child Concepts: A Proof of Concept.
Proceedings of the AMIA 2018, 2018

Opportunities to Improve Methods for Increasing Participation in Cancer Clinical Trials.
Proceedings of the AMIA 2018, 2018

2017
Enriching consumer health vocabulary through mining a social Q&A site: A similarity-based approach.
J. Biomed. Informatics, 2017

Explore Care Pathways of Colorectal Cancer Patients with Social Network Analysis.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Comparative Analysis of Geriatric and Adult Drug Clinical Trials on ClinicalTrials.gov.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Perceiving the Usefulness of the National Cancer Institute Metathesaurus for Enriching NCIt with Topological Patterns.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Exploratory textual analysis of consumer health languages for people who are D/deaf and hard of hearing.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

OC-2-KB: A software pipeline to build an evidence-based obesity and cancer knowledge base.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

An exploration of semantic relations in neural word embeddings using extrinsic knowledge.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Auditing the assignments of top-level semantic types in the UMLS semantic network to UMLS concepts.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Exploring text classification of social support in online health communities for people who are D/deaf and hard of hearing.
Proceedings of the Diversity of Engagement: Connecting People and Information in the Physical and Virtual Worlds, 2017

Emergent trends in research to increase participation of underrepresented populations in cancer clinical trials: A qualitative analysis of the HSRProj database.
Proceedings of the Diversity of Engagement: Connecting People and Information in the Physical and Virtual Worlds, 2017

Building an Obesity and Cancer Semantic Web Knowledge Base.
Proceedings of the AMIA 2017, 2017

Implementing a Hash-based Privacy-Preserving Entity Resolution Tool in the OneFlorida Clinical Data Research Network.
Proceedings of the AMIA 2017, 2017

Comparing and Contrasting A Priori and A Posteriori Generalizability Assessment of Clinical Trials on Type 2 Diabetes Mellitus.
Proceedings of the AMIA 2017, 2017

A Visual Analysis Tool of Qualitative Eligibility Criteria of Clinical Studies.
Proceedings of the AMIA 2017, 2017

2016
Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies.
J. Biomed. Informatics, 2016

DREAM: Classification scheme for dialog acts in clinical research query mediation.
J. Biomed. Informatics, 2016

Multivariate analysis of the population representativeness of related clinical studies.
J. Biomed. Informatics, 2016

Preliminary Analysis of Difficulty of Importing Pattern-Based Concepts into the National Cancer Institute Thesaurus.
Proceedings of the Exploring Complexity in Health: An Interdisciplinary Systems Approach - Proceedings of MIE2016 at HEC2016, Munich, Germany, 28 August, 2016

Examining Healthcare Utilization Patterns of Elderly and Middle-Aged Adults in the United States.
Proceedings of the Twenty-Ninth International Florida Artificial Intelligence Research Society Conference, 2016

Assessing the population representativeness of colorectal cancer treatment clinical trials.
Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

Towards an obesity-cancer knowledge base: Biomedical entity identification and relation detection.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Analysis of temporal constraints in qualitative eligibility criteria of cancer clinical studies.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Assessing the comorbidity gap between clinical studies and prevalence in elderly patient populations.
Proceedings of the 2016 IEEE-EMBS International Conference on Biomedical and Health Informatics, 2016

Topological-Pattern-Based Recommendation of UMLS Concepts for National Cancer Institute Thesaurus.
Proceedings of the AMIA 2016, 2016

2015
Visual aggregate analysis of eligibility features of clinical trials.
J. Biomed. Informatics, 2015

A comparative analysis of the density of the SNOMED CT conceptual content for semantic harmonization.
Artif. Intell. Medicine, 2015

Assessing the Collective Population Representativeness of Related Type 2 Diabetes Trials by Combining Public Data from ClinicalTrials.gov and NHANES.
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Similarity-Based Recommendation of New Concepts to a Terminology.
Proceedings of the AMIA 2015, 2015

Simulation-based Evaluation of the Generalizability Index for Study Traits.
Proceedings of the AMIA 2015, 2015

2014
Trend and Network Analysis of Common Eligibility Features for Cancer Trials in ClinicalTrials.gov.
Proceedings of the Smart Health - International Conference, 2014

A Method for Analyzing Commonalities in Clinical Trial Target Populations.
Proceedings of the AMIA 2014, 2014

2013
Rule-based support system for multiple UMLS semantic type assignments.
J. Biomed. Informatics, 2013

The readiness of SNOMED problem list concepts for meaningful use of electronic health records.
Artif. Intell. Medicine, 2013

Choosing the Granularity of Abstraction Networks for Orientation and Quality Assurance of the Sleep Domain Ontology.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013

Auditing Redundant Import in Reuse of a Top Level Ontology for the Drug Discovery Investigations Ontology.
Proceedings of the ICBO2013 Workshops: International Workshop on Vaccine and Drug Ontology Studies (VDOS 2013), International Workshop on Definitions in Ontologies (DO 2013), part of the Semantic Trilogy 2013 , Montreal, Quebec, Canada, July 6th, 2013

A Family-Based Framework for Supporting Quality Assurance of Biomedical Ontologies in BioPortal.
Proceedings of the AMIA 2013, 2013

2012
Clinical clarity versus terminological order: the readiness of SNOMED CT concept descriptors for primary care.
Proceedings of the 2nd International Workshop on Managing Interoperability and compleXity in Health Systems, 2012

Questionable relationship triples in the UMLS.
Proceedings of 2012 IEEE-EMBS International Conference on Biomedical and Health Informatics, 2012


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