Sunyang Fu

According to our database, Sunyang Fu authored at least 50 papers between 2015 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).

Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu

J. Am. Medical Informatics Assoc., November, 2023

Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO).

Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Muhammad F. Amith, J. Wilfred Fan, Jingcheng Du, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao

J. Am. Medical Informatics Assoc., August, 2023

The IMPACT framework and implementation for accessible in silico clinical phenotyping in the digital era.

Andrew Wen, Huan He, Sunyang Fu, Sijia Liu, Kurt Miller, Liwei Wang, Kirk E. Roberts, Steven Bedrick, William R. Hersh, Hongfang Liu

npj Digit. Medicine, 2023

BiomedGPT: A Unified and Generalist Biomedical Generative Pre-trained Transformer for Vision, Language, and Multimodal Tasks.

Kai Zhang, Jun Yu, Zhiling Yan, Yixin Liu, Eashan Adhikarla, Sunyang Fu, Xun Chen, Chen Chen, Yuyin Zhou, Xiang Li, Lifang He, Brian D. Davison, Quanzheng Li, Yong Chen, Hongfang Liu, Lichao Sun

CoRR, 2023

Detecting Reddit Users with Depression Using a Hybrid Neural Network.

Ziyi Chen, Ren Yang, Sunyang Fu, Nansu Zong, Hongfang Liu, Ming Huang

CoRR, 2023

Dementia Prediction in Older Adults Using Sex-Specific Health Trajectory Clustering.

Omar A. Ibrahim, Muskan Garg, Sunyang Fu, Maria Vassilaki, Ronald C. Petersen, Jennifer St Sauver, Sunghwan Sohn

Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

Classification of Patient Portal Messages with BERT-based Language Models.

Yang Ren, Dezhi Wu, Aditya Khurana, George M. Mastorakos, Sunyang Fu, Nansu Zong, Jungwei Fan, Hongfang Liu, Ming Huang

Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

Identifying Major Depressive Disorder From Clinical Notes Using Neural Language Models with Distant Supervision.

Kurt Miller, Bhavani Singh Agnikula Kshatriya, Nicolas A. Nunez, Manuel Gardea-Resendez, Euijung Ryu, Brandon J. Coombes, Sunyang Fu, Mark A. Frye, Joanna M. Biernacka, Ming Huang, Yanshan Wang

Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

Detecting Reddit Users with Depression Using a Hybrid Neural Network SBERT-CNN.

Ziyi Chen, Ren Yang, Sunyang Fu, Nansu Zong, Hongfang Liu, Ming Huang

Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

Harnessing Transfer Learning for Dementia Prediction: Leveraging Sex-Different Mild Cognitive Impairment Prognosis.

Ziming Liu, Muskan Garg, Sunyang Fu, Surjodeep Sarkar, Maria Vassilaki, Ronald C. Petersen, Jennifer St. Sauver, Sunghwan Sohn

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

Computational drug repurposing based on electronic health records: a scoping review.

Nansu Zong, Andrew Wen, Sungrim Moon, Sunyang Fu, Liwei Wang, Yiqing Zhao, Yue Yu, Ming Huang, Yanshan Wang, Gang Zheng, Michelle M. Mielke, James R. Cerhan, Hongfang Liu

npj Digit. Medicine, 2022

Real-time risk prediction of colorectal surgery-related post-surgical complications using GRU-D model.

Xiaoyang Ruan, Sunyang Fu, Curtis B. Storlie, Kellie L. Mathis, David W. Larson, Hongfang Liu

J. Biomed. Informatics, 2022

A hybrid model to identify fall occurrence from electronic health records.

Sunyang Fu, Bjoerg Thorsteinsdottir, Xin Zhang, Guilherme S. Lopes, Sandeep R. Pagali, Nathan K. LeBrasseur, Andrew Wen, Hongfang Liu, Walter A. Rocca, Janet E. Olson, Jennifer St. Sauver, Sunghwan Sohn

Int. J. Medical Informatics, 2022

Quality assessment of functional status documentation in EHRs across different healthcare institutions.

Sunyang Fu, Maria Vassilaki, Omar A. Ibrahim, Ronald C. Petersen, Sandeep R. Pagali, Jennifer St Sauver, Sungrim Moon, Liwei Wang, Jungwei Fan, Hongfang Liu, Sunghwan Sohn

Frontiers Digit. Health, 2022

Systematic Design and Evaluation of Social Determinants of Health Ontology (SDoHO).

Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Jingcheng Du, J. Wilfred Fan, Muhammad F. Amith, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao

CoRR, 2022

MedTator: a serverless annotation tool for corpus development.

Huan He, Sunyang Fu, Liwei Wang, Sijia Liu, Andrew Wen, Hongfang Liu

Bioinform., 2022

BETA: a comprehensive benchmark for computational drug-target prediction.

Nansu Zong, Ning Li, Andrew Wen, Victoria Ngo, Yue Yu, Ming Huang, Shaika Chowdhury, Chao Jiang, Sunyang Fu, Richard Weinshilboum, Guoqian Jiang, Lawrence Hunter, Hongfang Liu

Briefings Bioinform., 2022

Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing.

Liwei Wang, Sunyang Fu, Andrew Wen, Xiaoyang Ruan, Huan He, Sijia Liu, Sungrim Moon, Michelle Mai, Irbaz Bin Riaz, Nan Wang, Ping Yang, Hua Xu, Jeremy L. Warner, Hongfang Liu

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Evaluation of Document-Level Identification of Pulmonary Nodules in Radiology Reports Using FLAIR Natural Language Processing Framework.

Ray Oian, Sunyang Fu, Hongfang Liu

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Aspect-based Sentiment Analysis of Radiology Patient Experience Surveys: A Cohort Study.

Kurt Miller, Sunyang Fu, Kris Abah, Andrea Maraboto Escarria, Kevin J. Peterson, Hongfang Liu, Lacey Hart, Nelly Tan, Ming Huang

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Detection of Dementia Signals from Longitudinal Clinical Visits Using One-Class Classification.

Omar A. Ibrahim, Sunyang Fu, Maria Vassilaki, Michelle M. Mielke, Jennifer St Sauver, Ronald C. Petersen, Sunghwan Sohn

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

MedTator: A Serverless Web-based Tool for Corpus Annotation.

Huan He, Sunyang Fu, Liwei Wang, Andrew Wen, Sijia Liu, Hongfang Liu

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Probing Radiology Patient Experience Feedbacks with Aspect-based Sentiment Analysis.

Kurt Miller, Ming Huang, Sunyang Fu, Kris Abah, Andrea Maraboto Escarria, Kevin J. Peterson, Hongfang Liu, Lacey Hart, Nelly Tan

Proceedings of the AMIA 2022, 2022

Towards User-centered Corpus Development: Lessons Learnt from Designing and Developing MedTator.

Huan He, Sunyang Fu, Liwei Wang, Andrew Wen, Sijia Liu, Sungrim Moon, Kurt Miller, Hongfang Liu

Proceedings of the AMIA 2022, 2022

Quality Assessment of Functional Status Documentation in EHR Across Institutions.

Sunyang Fu, Maria Vassilaki, Omar A. Ibrahim, Ronald C. Petersen, Jennifer St. Sauver, Liwei Wang, Jungwei Fan, Hongfang Liu, Sunghwan Sohn

Proceedings of the AMIA 2022, 2022

2021

An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses.

Andrew Wen, Liwei Wang, Huan He, Sijia Liu, Sunyang Fu, Sunghwan Sohn, Jacob A. Kugel, Vinod C. Kaggal, Ming Huang, Yanshan Wang, Feichen Shen, Jungwei Fan, Hongfang Liu

J. Biomed. Informatics, 2021

An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C).

Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Rui Zhang, John D. Osborne, Masoud Rouhizadeh, Yongqun He, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu

CoRR, 2021

Neural Language Models with Distant Supervision to Identify Major Depressive Disorder from Clinical Notes.

Bhavani Singh Agnikula Kshatriya, Nicolas A. Nunez, Manuel Gardea-Resendez, Euijung Ryu, Brandon J. Coombes, Sunyang Fu, Mark A. Frye, Joanna M. Biernacka, Yanshan Wang

CoRR, 2021

The Implication of Latent Information Quality to the Reproducibility of Secondary Use of Electronic Health Records.

Sunyang Fu, Andrew Wen, Sandeep R. Pagali, Nansu Zong, Jennifer St Sauver, Sunghwan Sohn, Jungwei Fan, Hongfang Liu

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

Prediction of Incident Dementia Using Patient Temporal Health Status.

Sunyang Fu, Omar A. Ibrahim, Yanshan Wang, Maria Vassilaki, Ronald C. Petersen, Michelle M. Mielke, Jennifer St Sauver, Sunghwan Sohn

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

Early Alert of Elderly Cognitive Impairment using Temporal Streaming Clustering.

Omar A. Ibrahim, Sunyang Fu, Maria Vassilaki, Ronald C. Petersen, Michelle M. Mielke, Jennifer St Sauver, Sunghwan Sohn

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Deep Learning Approaches for Breast Cancer Characteristics Extraction from Electronic Health Records.

Sicheng Zhou, Liwei Wang, Nan Wang, Sunyang Fu, Chetan Shenoy, Anne H. Blaes, Hongfang Liu, Rui Zhang

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Detecting Major Depressive Disorder from Clinical Notes using Neural Language Models with Distant Supervision.

Bhavani Singh Agnikula Kshatriya, Nicolas A. Nunez, Manuel Gardea-Resendez, Euijung Ryu, Brandon J. Coombes, Sunyang Fu, Mark A. Frye, Joanna M. Biernacka, Yanshan Wang

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Assessment of the impact of EHR heterogeneity for clinical research through a case study of silent brain infarction.

Sunyang Fu, Lester Y. Leung, Anne-Olivia Raulli, David F. Kallmes, Kristin A. Kinsman, Kristoff B. Nelson, Michael S. Clark, Patrick H. Luetmer, Paul R. Kingsbury, David M. Kent, Hongfang Liu

BMC Medical Informatics Decis. Mak., 2020

MedSTS: a resource for clinical semantic textual similarity.

Yanshan Wang, Naveed Afzal, Sunyang Fu, Liwei Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu

Lang. Resour. Evaluation, 2020

Clinical concept extraction: A methodology review.

Sunyang Fu, David Chen, Huan He, Sijia Liu, Sungrim Moon, Kevin J. Peterson, Feichen Shen, Liwei Wang, Yanshan Wang, Andrew Wen, Yiqing Zhao, Sunghwan Sohn, Hongfang Liu

J. Biomed. Informatics, 2020

DeepTKAClassifier: Brand Classification of Total Knee Arthroplasty Implants Using Explainable Deep Convolutional Neural Networks.

Shi Yan, Taghi Ramazanian, Elham Sagheb, Sunyang Fu, Sunghwan Sohn, David G. Lewallen, Hongfang Liu, Walter K. Kremers, Vipin Chaudhary, Michael J. Taunton, Hilal Maradit Kremers, Ahmad P. Tafti

Proceedings of the Advances in Visual Computing - 15th International Symposium, 2020

Extracting Patient Genetic Information from Unstructured Clinical Notes.

Yiqing Zhao, Hanzhong Yu, Luke A. Carlson, Feichen Shen, Sunyang Fu, Hongfang Liu, Chen Wang

Proceedings of the AMIA 2020, 2020

Accelerating Development of Learning Healthcare Systems via Distantly Supervised Knowledge Discovery.

Andrew Wen, Sunyang Fu, Feichen Shen, Hongfang Liu

Proceedings of the AMIA 2020, 2020

Big Impact from Small Data: Unsupervised Machine Learning Approaches for Chronic Pain Patient Subgrouping.

Luke A. Carlson, Jennifer St. Sauver, Sunyang Fu, Ahmad P. Tafti, Jungwei Fan, Molly M. Jeffery, Rozalina G. McCoy, Hongfang Liu, Yanshan Wang

Proceedings of the AMIA 2020, 2020

Annotating Chronic Pain Episodes in EHR Text: Guideline Development and Corpus Analysis.

Luke A. Carlson, Molly M. Jeffery, Sunyang Fu, Huan He, Rozalina G. McCoy, Yanshan Wang, W. M. Hooten, Jennifer L. St. Sauver, Hongfang Liu, Jungwei Fan

Proceedings of the AMIA 2020, 2020

Predicting Section Location of Clinical Sentences using BERT Encoder - A Pilot Study.

Sijia Liu, Sunyang Fu, Sungrim Moon, Andrew Wen, Hongfang Liu

Proceedings of the AMIA 2020, 2020

2019

Desiderata for delivering NLP to accelerate healthcare AI advancement and a Mayo Clinic NLP-as-a-service implementation.

Andrew Wen, Sunyang Fu, Sungrim Moon, Mohamed El Wazir, Andrew Rosenbaum, Vinod C. Kaggal, Sijia Liu, Sunghwan Sohn, Hongfang Liu, Jungwei Fan

npj Digit. Medicine, 2019

Development of Clinical Concept Extraction Applications: A Methodology Review.

Sunyang Fu, David Chen, Sijia Liu, Sungrim Moon, Kevin J. Peterson, Feichen Shen, Yanshan Wang, Liwei Wang, Andrew Wen, Yiqing Zhao, Sunghwan Sohn, Hongfang Liu

CoRR, 2019

How Good is Artificial Intelligence at Automatically Answering Consumer Questions Related to Alzheimer's Disease?

Yanshan Wang, Krishna B. Soundararajan, Sunyang Fu, Luke A. Carlson, Rebecca A. Smith, David S. Knopman, Hongfang Liu

CoRR, 2019

Artificial intelligence to organize patient portal messages: a journey from an ensemble deep learning text classification to rule-based named entity recognition.

Ahmad P. Tafti, Sunyang Fu, Aditya Khurana, George M. Mastorakos, Kenneth G. Poole, Stephen J. Traub, James A. Yiannias, Hongfang Liu

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018

BioCreative/OHNLP Challenge 2018.

Majid Rastegar-Mojarad, Sijia Liu, Yanshan Wang, Naveed Afzal, Liwei Wang, Feichen Shen, Sunyang Fu, Hongfang Liu

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

Supervised Learning Approach to Link Prediction in FDA Adverse Event Reporting System (FAERS) Database Network.

Andy Jinseok Lee, Sunyang Fu, V. G. Vinod Vydiswaran

Proceedings of the AMIA 2018, 2018

Natural Language Processing for the Identification of Silent Brain Infractions from Neuroimaging Reports.

Sunyang Fu, Lester Y. Leung, Anne-Olivia Raulli, David F. Kallmes, Kristin A. Kinsman, Kristoff B. Nelson, Michael S. Clark, Patrick H. Luetmer, Paul R. Kingsbury, David M. Kent, Hongfang Liu

Proceedings of the AMIA 2018, 2018

2015

Early Prediction of Movie Success - What, Who, and When.

Michael T. Lash, Sunyang Fu, Shiyao Wang, Kang Zhao

Proceedings of the Social Computing, Behavioral-Cultural Modeling, and Prediction, 2015