Cui Tao

According to our database, Cui Tao authored at least 223 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Evaluating MedDRA-to-ICD terminology mappings.

Xinyuan Zhang, Yixue Feng, Fang Li, Jin Ding, Danyal Tahseen, Ezekiel Hinojosa, Yong Chen, Cui Tao

BMC Medical Informatics Decis. Mak., January, 2024

Lessons learned from annotation of VAERS reports on adverse events following influenza vaccination and related to Guillain-Barré syndrome.

Madhuri Sankaranarayanapillai, Su Wang, Hangyu Ji, Hsing-yi Song, Cui Tao

BMC Medical Informatics Decis. Mak., January, 2024

Uncovering Misattributed Suicide Causes through Annotation Inconsistency Detection in Death Investigation Notes.

Song Wang, Yiliang Zhou, Ziqiang Han, Cui Tao, Yunyu Xiao, Ying Ding, Joydeep Ghosh, Yifan Peng

CoRR, 2024

2023

DEVO: an ontology to assist with dermoscopic feature standardization.

Xinyuan Zhang, Rebecca Z. Lin, Muhammad Tuan Amith, Cynthia Wang, Jeremy Light, John Strickley, Cui Tao

BMC Medical Informatics Decis. Mak., December, 2023

An ontology-based approach for harmonization and cross-cohort query of Alzheimer's disease data resources.

Xubing Hao, Xiaojin Li, Guo-Qiang Zhang, Cui Tao, Paul E. Schulz, Licong Cui

BMC Medical Informatics Decis. Mak., December, 2023

Machine learning-based donor permission extraction from informed consent documents.

Meng Zhang, Madhuri Sankaranarayanapillai, Jingcheng Du, Yang Xiang, Frank J. Manion, Marcelline R. Harris, Cooper Stansbury, Huy Anh Pham, Cui Tao

BMC Bioinform., December, 2023

Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO).

Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Muhammad F. Amith, J. Wilfred Fan, Jingcheng Du, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao

J. Am. Medical Informatics Assoc., August, 2023

An NLP approach to identify SDoH-related circumstance and suicide crisis from death investigation narratives.

Song Wang, Yifang Dang, Zhaoyi Sun, Ying Ding, Jyotishman Pathak, Cui Tao, Yunyu Xiao, Yifan Peng

J. Am. Medical Informatics Assoc., July, 2023

AE-GPT: Using Large Language Models to Extract Adverse Events from Surveillance Reports-A Use Case with Influenza Vaccine Adverse Events.

Yiming Li, Jianfu Li, Jianping He, Cui Tao

CoRR, 2023

Explainable Graph Neural Network for Alzheimer's Disease And Related Dementias Risk Prediction.

Xinyue Hu, Zenan Sun, Yi Nian, Yifang Dang, Fang Li, Jingna Feng, Evan Yu, Cui Tao

CoRR, 2023

Advancing Biomedicine with Graph Representation Learning: Recent Progress, Challenges, and Future Directions.

Fang Li, Yi Nian, Zenan Sun, Cui Tao

CoRR, 2023

Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research.

Muhammad Amith, Licong Cui, Kirk Roberts, Cui Tao

Proceedings of the Companion Proceedings of the ACM Web Conference 2023, 2023

Empowering Caregivers of Alzheimer's Disease and Related Dementias (ADRD) with a GPT-Powered Voice Assistant: Leveraging Peer Insights from Social Media.

Kimia Tuz Zaman, Wordh Ul Hasan, Juan Li, Cui Tao

Proceedings of the IEEE Symposium on Computers and Communications, 2023

Honoring Heritage, Managing Health: A Mobile Diabetes Self-Management App for Native Americans with Cultural Sensitivity and Local Factors.

Wordh Ul Hasan, Juan Li, Shadi Alian, Tianyi Liang, Vikram Pandey, Kimia Tuz Zaman, Jun Kong, Cui Tao

Proceedings of the IEEE Symposium on Computers and Communications, 2023

Named Entity Recognition and Normalization for Alzheimer's Disease Eligibility Criteria.

Zenan Sun, Cui Tao

Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

Development of a Natural Language Processing Tool to Extract Acupuncture Point Location Terms.

Yiming Li, Xueqing Peng, Jianfu Li, Suyuan Peng, Donghong Pei, Cui Tao, Hua Xu, Na Hong

Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

Suicide Tendency Prediction from Psychiatric Notes Using Transformer Models.

Zehan Li, Iqra Ameer, Yan Hu, Ahmed Abdelhameed, Cui Tao, Salih Selek, Hua Xu

Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

Empowering Personalized Health Data Queries with Knowledge Graph and GPT-Enhanced Voice Assistant.

Xin Wang, Wordh Ul Hasan, Juan Li, Rasha Hendawi, Yang Du, Bo Xie, Cui Tao

Proceedings of the IEEE International Conference on High Performance Computing & Communications, 2023

Evaluating Domain-Independent Small Talk Conversations to Improve Clinical Communication Interaction for Human and Machine.

Chloe Aguilar, Muhammad Amith, Lu Tang, Jane Hamilton, Lara S. Savas, Danniel Rhee, Tazrin Khan, Cui Tao

Proceedings of the Digital Human Modeling and Applications in Health, Safety, Ergonomics and Risk Management, 2023

Distributionally Robust Cross Subject EEG Decoding.

Tiehang Duan, Zhenyi Wang, Gianfranco Doretto, Fang Li, Cui Tao, Donald A. Adjeroh

Proceedings of the ECAI 2023 - 26th European Conference on Artificial Intelligence, September 30 - October 4, 2023, Kraków, Poland, 2023

Replay with Stochastic Neural Transformation for Online Continual EEG Classification.

Tiehang Duan, Zhenyi Wang, Gianfranco Doretto, Fang Li, Cui Tao, Donald A. Adjeroh

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

Systematic Design and Evaluation of Social Determinants of Health Ontology (SDoHO).

Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Jingcheng Du, J. Wilfred Fan, Muhammad F. Amith, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao

CoRR, 2022

Mining On Alzheimer's Diseases Related Knowledge Graph to Identity Potential AD-related Semantic Triples for Drug Repurposing.

Yi Nian, Xinyue Hu, Rui Zhang, Jingna Feng, Jingcheng Du, Fang Li, Yong Chen, Cui Tao

CoRR, 2022

Mining on Alzheimer's diseases related knowledge graph to identity potential AD-related semantic triples for drug repurposing.

Yi Nian, Xinyue Hu, Rui Zhang, Jingna Feng, Jingcheng Du, Fang Li, Larry Bu, Yuji Zhang, Yong Chen, Cui Tao

BMC Bioinform., 2022

Toward a standard formal semantic representation of the model card report.

Muhammad Tuan Amith, Licong Cui, Degui Zhi, Kirk Roberts, Xiaoqian Jiang, Fang Li, Evan Yu, Cui Tao

BMC Bioinform., 2022

Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs.

Warren Manuel, Rashmie Abeysinghe, Yongqun He, Cui Tao, Licong Cui

J. Biomed. Semant., 2022

Chemical-Protein Relation Extraction with Pre-trained Prompt Tuning.

Jianping He, Fang Li, Xinyue Hu, Jianfu Li, Yi Nian, Jingqi Wang, Yang Xiang, Qiang Wei, Hua Xu, Cui Tao

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Combining Transfer Learning with Graph Attention Models for HIV Risk Prediction.

Evan Yu, Cui Tao, Jingcheng Du, Degui Zhi, Yang Xiang, Kayo Fujimoto, Xi Luo, John A. Schneider

Proceedings of the AMIA 2022, 2022

Ontologies in the Behavioral Sciences: Accelerating Research and the Accessibility and Use of Knowledge.

Mark A. Musen, Jiang Bian, Bruce Chorpita, Vimla Patel, Cui Tao

Proceedings of the AMIA 2022, 2022

2021

Med-BERT: pretrained contextualized embeddings on large-scale structured electronic health records for disease prediction.

Laila Rasmy, Yang Xiang, Ziqian Xie, Cui Tao, Degui Zhi

npj Digit. Medicine, 2021

The ontology of fast food facts: conceptualization of nutritional fast food data for consumers and semantic web applications.

Muhammad Amith, Chidinma Onye, Tracey Ledoux, Grace Xiong, Cui Tao

BMC Medical Informatics Decis. Mak., 2021

COVID-19 trial graph: a linked graph for COVID-19 clinical trials.

Jingcheng Du, Qing Wang, Jingqi Wang, Prerana Ramesh, Yang Xiang, Xiaoqian Jiang, Cui Tao

J. Am. Medical Informatics Assoc., 2021

Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning.

Jingcheng Du, Yang Xiang, Madhuri Sankaranarayanapillai, Meng Zhang, Jingqi Wang, Yuqi Si, Huy Anh Pham, Hua Xu, Yong Chen, Cui Tao

J. Am. Medical Informatics Assoc., 2021

Knowledge Graph-based Neurodegenerative Diseases and Diet Relationship Discovery.

Yi Nian, Jingcheng Du, Larry Bu, Fang Li, Xinyue Hu, Yuji Zhang, Cui Tao

CoRR, 2021

Understanding Public Perceptions of Measles from Twitter Using Multi-Task Convolutional Neural Networks.

Samuel Wang, Jingcheng Du, Lu Tang, Cui Tao

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

Experimenting with a Prototype Interactive Narrative Game to Improve Knowledge and Beliefs for the HPV Vaccine.

Anna Zhu, Muhammad Amith, Lu Tang, Rachel Cunningham, Angela Xu, Julie A. Boom, Cui Tao

Proceedings of the HCI International 2021 - Late Breaking Papers: HCI Applications in Health, Transport, and Industry, 2021

Patient-Provider Communication Training Models for Interactive Speech Devices.

Patricia Ngantcha, Muhammad Amith, Cui Tao, Kirk Roberts

Proceedings of the Digital Human Modeling and Applications in Health, Safety, Ergonomics and Risk Management. Human Body, Motion and Behavior, 2021

Dental EHR-infused Persona Ontologies to Enrich Dental Dialogue Interaction of Agents.

Patricia Ngantcha, Muhammad Tuan Amith, Kirk Roberts, John A. Valenza, Muhammad Walji, Cui Tao

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Developing Ontologies to Standardize Descriptions of Visual and Dermoscopic Elements.

Rebecca Z. Lin, Muhammad Tuan Amith, Xinyuan Zhang, Cynthia Wang, Jeremy Light, John Strickley, Cui Tao

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Data and Model Biases in Social Media Analyses: A Case Study of COVID-19 Tweets.

Yunpeng Zhao, Pengfei Yin, Yongqiu Li, Xing He, Jingcheng Du, Cui Tao, Yi Guo, Mattia Prosperi, Pierangelo Veltri, Xi Yang, Yonghui Wu, Jiang Bian

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

FHIRTime: Standardizing Temporal Patterns Identified from Clinical Narratives Using HL7 FHIR.

Daniel J. Stone, Sijia Liu, Yuan Luo, Andrew Wen, Nansu Zong, Luke V. Rasmussen, Prakash Adekkanattu, Pascal S. Brandt, Jennifer A. Pacheco, Fei Wang, Cui Tao, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Expressing and Executing Informed Consent Permissions using SWRL: The All of Us Use Case.

Muhammad Amith, Marcelline R. Harris, Cooper Stansbury, Kathleen Ford, Frank J. Manion, Cui Tao

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

A semantic relationship mining method among disorders, genes, and drugs from different biomedical datasets.

Li Zhang, Jiamei Hu, Qianzhi Xu, Fang Li, Guozheng Rao, Cui Tao

BMC Medical Informatics Decis. Mak., 2020

Selected articles from the Fourth International Workshop on Semantics-Powered Data Mining and Analytics (SEPDA 2019).

Zhe He, Cui Tao, Jiang Bian, Rui Zhang

BMC Medical Informatics Decis. Mak., 2020

Conversational ontology operator: patient-centric vaccine dialogue management engine for spoken conversational agents.

Muhammad Amith, Rebecca Lin, Licong Cui, Dennis Wang, Anna Zhu, Grace Xiong, Hua Xu, Kirk Roberts, Cui Tao

BMC Medical Informatics Decis. Mak., 2020

Friend of a Friend with Benefits ontology (FOAF+): extending a social network ontology for public health.

Muhammad Amith, Kayo Fujimoto, Rebecca Mauldin, Cui Tao

BMC Medical Informatics Decis. Mak., 2020

Mining Twitter to assess the determinants of health behavior toward human papillomavirus vaccination in the United States.

Hansi Zhang, Christopher Wheldon, Adam G. Dunn, Cui Tao, Jinhai Huo, Rui Zhang, Mattia Prosperi, Yi Guo, Jiang Bian

J. Am. Medical Informatics Assoc., 2020

A study of deep learning approaches for medication and adverse drug event extraction from clinical text.

Qiang Wei, Zongcheng Ji, Zhiheng Li, Jingcheng Du, Jingqi Wang, Jun Xu, Yang Xiang, Firat Tiryaki, Stephen Wu, Yaoyun Zhang, Cui Tao, Hua Xu

J. Am. Medical Informatics Assoc., 2020

iDISK: the integrated DIetary Supplements Knowledge base.

Rubina F. Rizvi, Jake Vasilakes, Terrence J. Adam, Genevieve B. Melton, Jeffrey R. Bishop, Jiang Bian, Cui Tao, Rui Zhang

J. Am. Medical Informatics Assoc., 2020

Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies.

Laila Rasmy, Firat Tiryaki, Yujia Zhou, Yang Xiang, Cui Tao, Hua Xu, Degui Zhi

J. Am. Medical Informatics Assoc., 2020

Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events.

Fang Li, Jingcheng Du, Yongqun He, Hsing-yi Song, Mohcine Madkour, Guozheng Rao, Yang Xiang, Yi Luo, Henry W. Chen, Sijia Liu, Liwei Wang, Hongfang Liu, Hua Xu, Cui Tao

J. Am. Medical Informatics Assoc., 2020

Recognizing software names in biomedical literature using machine learning.

Qiang Wei, Yaoyun Zhang, Muhammad Amith, Rebecca Lin, Jenay Lapeyrolerie, Cui Tao, Hua Xu

Health Informatics J., 2020

Exploring temporal suicidal behavior patterns on social media: Insight from Twitter analytics.

Jianhong Luo, Jingcheng Du, Cui Tao, Hua Xu, Yaoyun Zhang

Health Informatics J., 2020

Ontological representation-oriented term normalization and standardization of the Research Domain Criteria.

Fang Li, Guozheng Rao, Jingcheng Du, Yang Xiang, Yaoyun Zhang, Salih Selek, Jane Elizabeth Hamilton, Hua Xu, Cui Tao

Health Informatics J., 2020

On the evidence consistency of pharmacovigilance outcomes between Food and Drug Administration Adverse Event Reporting System and electronic medical record data for acute mania patients.

Rui Duan, Xinyuan Zhang, Jingcheng Du, Jing Huang, Cui Tao, Yong Chen

Health Informatics J., 2020

Exploring the semantics in mental health research.

Jiang Bian, Yaoyun Zhang, Cui Tao

Health Informatics J., 2020

Semantic based model of Conceptual Work Products for formal verification of complex interactive systems.

Mohcine Madkour, Keith A. Butler, Eric Mercer, Ali Bahrami, Cui Tao

CoRR, 2020

Med-BERT: pre-trained contextualized embeddings on large-scale structured electronic health records for disease prediction.

Laila Rasmy, Yang Xiang, Ziqian Xie, Cui Tao, Degui Zhi

CoRR, 2020

Examining Potential Usability and Health Beliefs Among Young Adults Using a Conversational Agent for HPV Vaccine Counseling.

Muhammad Amith, Rebecca Lin, Rachel Cunningham, Qiwei Luna Wu, Lara S. Savas, Yang Gong, Julie A. Boom, Lu Tang, Cui Tao

CoRR, 2020

Named Entity Recognition from Table Headers in Randomized Controlled Trial Articles.

Qiang Wei, Yujia Zhou, Bo Zhao, Xinyue Hu, Qiaozhu Mei, Cui Tao, Hua Xu

Proceedings of the 8th IEEE International Conference on Healthcare Informatics, 2020

Development and Evaluation of ADCareOnto - an Ontology for Personalized Home Care for Persons with Alzheimer's Disease.

Juan Li, Rasha Hendawi, Vikram Pandey, Rafa Alenezi, Xin Wang, Bo Xie, Cui Tao

Proceedings of the 22nd IEEE International Conference on E-health Networking, 2020

An Interactive Game for Changing Youth Behavior Regarding E-cigarettes.

Angela Xu, Muhammad Amith, Jianfu Li, Lu Tang, Cui Tao

Proceedings of the HCI International 2020 - Posters - 22nd International Conference, 2020

A health consumer ontology of fast food information.

Muhammad Amith, Jing Wang, Grace Xiong, Kirk Roberts, Cui Tao

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Identifying Clinical Risk Factors for Opioid Use Disorder using a Distributed Algorithm to Combine Real-World Data from a Large Clinical Data Research Network.

Jiayi Tong, Zhaoyi Chen, Rui Duan, Wei-Hsuan Lo-Ciganic, Tianchen Lyu, Cui Tao, Peter A. Merkel, Henry R. Kranzler, Jiang Bian, Yong Chen

Proceedings of the AMIA 2020, 2020

Leverage Real-World Longitudinal Data in Large Clinical Research Networks for Alzheimer's Disease and Related Dementia (ADRD).

Rui Duan, Zhaoyi Chen, Jiayi Tong, Chongliang Luo, Tianchen Lyu, Cui Tao, Demetrius Maraganore, Jiang Bian, Yong Chen

Proceedings of the AMIA 2020, 2020

2019

Leveraging deep learning to understand health beliefs about the Human Papillomavirus Vaccine from social media.

Jingcheng Du, Rachel Cunningham, Yang Xiang, Fang Li, Yuxi Jia, Julie A. Boom, Sahiti Myneni, Jiang Bian, Chongliang Luo, Yong Chen, Cui Tao

npj Digit. Medicine, 2019

The International Conference on Intelligent Biology and Medicine 2018: Medical Informatics Thematic Track (MedicalInfo2018).

Yaoyun Zhang, Cui Tao, Yang Gong, Kai Wang, Zhongming Zhao

BMC Medical Informatics Decis. Mak., 2019

Time-sensitive clinical concept embeddings learned from large electronic health records.

Yang Xiang, Jun Xu, Yuqi Si, Zhiheng Li, Laila Rasmy, Yujia Zhou, Firat Tiryaki, Fang Li, Yaoyun Zhang, Yonghui Wu, Xiaoqian Jiang, W. Jim Zheng, Degui Zhi, Cui Tao, Hua Xu

BMC Medical Informatics Decis. Mak., 2019

Comparing drug safety of hepatitis C therapies using post-market data.

Jing Huang, Xinyuan Zhang, Jiayi Tong, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Cui Tao, Yong Chen

BMC Medical Informatics Decis. Mak., 2019

Selected articles from the Third International Workshop on Semantics-Powered Data Analytics (SEPDA 2018).

Zhe He, Jiang Bian, Cui Tao, Rui Zhang

BMC Medical Informatics Decis. Mak., 2019

Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD.

Guocai Chen, Yuxi Jia, Lisha Zhu, Ping Li, Lin Zhang, Cui Tao, W. Jim Zheng

BMC Medical Informatics Decis. Mak., 2019

Architecture and usability of OntoKeeper, an ontology evaluation tool.

Muhammad Amith, Frank J. Manion, Chen Liang, Marcelline R. Harris, Dennis Wang, Yongqun He, Cui Tao

BMC Medical Informatics Decis. Mak., 2019

Network context matters: graph convolutional network model over social networks improves the detection of unknown HIV infections among young men who have sex with men.

Yang Xiang, Kayo Fujimoto, John A. Schneider, Yuxi Jia, Degui Zhi, Cui Tao

J. Am. Medical Informatics Assoc., 2019

ML-Net: multi-label classification of biomedical texts with deep neural networks.

Jingcheng Du, Qingyu Chen, Yifan Peng, Yang Xiang, Cui Tao, Zhiyong Lu

J. Am. Medical Informatics Assoc., 2019

Mining Twitter to Assess the Determinants of Health Behavior towards Human Papillomavirus Vaccination in the United States.

Hansi Zhang, Christopher Wheldon, Adam G. Dunn, Cui Tao, Jinhai Huo, Rui Zhang, Mattia Prosperi, Yi Guo, Jiang Bian

CoRR, 2019

Exploring difference in public perceptions on HPV vaccine between gender groups from Twitter using deep learning.

Jingcheng Du, Chongliang Luo, Qiang Wei, Yong Chen, Cui Tao

CoRR, 2019

A 2018 workshop: vaccine and drug ontology studies (VDOS 2018).

Junguk Hur, Cui Tao, Yongqun He

BMC Bioinform., 2019

Conceiving an application ontology to model patient human papillomavirus vaccine counseling for dialogue management.

Muhammad Amith, Kirk Roberts, Cui Tao

BMC Bioinform., 2019

A Multi-Source Linked Open Data Fusion Method for Gene Disorder Drug Relationship Querying.

Guozheng Rao, Li Zhang, Xiaowang Zhang, Wenwen Li, Fang Li, Cui Tao

Proceedings of the 4th International Workshop on Semantics-Powered Data Mining and Analytics co-located with the 18th International Semantic Web Conference (ISWC 2019), 2019

An Ontology-Powered Dialogue Engine For Patient Communication of Vaccines.

Muhammad Amith, Rebecca Lin, Licong Cui, Dennis Wang, Anna Zhu, Grace Xiong, Hua Xu, Kirk Roberts, Cui Tao

Proceedings of the 4th International Workshop on Semantics-Powered Data Mining and Analytics co-located with the 18th International Semantic Web Conference (ISWC 2019), 2019

Text Mining and Machine Learning for Precision Medicine.

Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP.

Ergin Soysal, Jeremy L. Warner, Jingqi Wang, Min Jiang, Krysten Harvey, Sandeep Kumar Jain, Xiao Dong, Hsing-yi Song, Harish Siddhanamatha, Liwei Wang, Qi Dai, Qingxia Chen, Xianglin Du, Cui Tao, Ping Yang, Joshua Charles Denny, Hongfang Liu, Hua Xu

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Early Usability Assessment of a Conversational Agent for HPV Vaccination.

Muhammad Amith, Anna Zhu, Rachel Cunningham, Rebecca Lin, Lara S. Savas, Laura Shay, Yong Chen, Yang Gong, Julie Boom, Kirk Roberts, Cui Tao

Proceedings of the Improving Usability, Safety and Patient Outcomes with Health Information Technology, 2019

Systematic Design of Drug Repurposing-Oriented Alzheimer's Disease Ontology.

Fang Li, Mingqiang Wang, Huy Anh Pham, Yang Xiang, Muhammad Tuan Amith, Cui Tao, Jingcheng Du, Guozheng Rao

Proceedings of the 2019 IEEE International Conference on Healthcare Informatics, 2019

Using Stases to Enrich Queries for When and Where Regulations Are in Force.

Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Frank J. Manion, Marcelline R. Harris, Cui Tao

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

Alexa, What Should I Eat? : A Personalized Virtual Nutrition Coach for Native American Diabetes Patients Using Amazon's Smart Speaker Technology.

Bikesh Maharjan, Juan Li, Jun Kong, Cui Tao

Proceedings of the 2019 IEEE International Conference on E-health Networking, 2019

NET-EXPO: A Gephi Plugin Towards Social Network Analysis of Network Exposure for Unipartite and Bipartite Graphs.

Muhammad Tuan Amith, Kayo Fujimoto, Cui Tao

Proceedings of the HCI International 2019 - Posters - 21st International Conference, 2019

Ontology of Consumer Health Vocabulary: providing a formal and interoperable semantic resource for linking lay language and medical terminology.

Muhammad Amith, Licong Cui, Kirk Roberts, Hua Xu, Cui Tao

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Relation Extraction from Clinical Narratives Using Pre-trained Language Models.

Qiang Wei, Zongcheng Ji, Yuqi Si, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Stephen Wu, Cui Tao, Kirk Roberts, Hua Xu

Proceedings of the AMIA 2019, 2019

Expanding the Representation of Permissions and Deontic Roles in the Informed Consent Ontology (ICO).

Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Marcelline R. Harris, Elizabeth Umberfield, Frank J. Manion, Cui Tao

Proceedings of the AMIA 2019, 2019

Refactoring and Expanding the Informed Consent Ontology (ICO).

Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Marcelline R. Harris, Frank J. Manion, Cui Tao

Proceedings of the AMIA 2019, 2019

A Scoping Review to Identify Biobank Classification and Permissions to Share Metadata.

Marcelline R. Harris, Frank J. Manion, Madhuri Sankaranarayanapillai, Hsing-yi Song, Marisa Conte, Cui Tao

Proceedings of the AMIA 2019, 2019

2018

Towards improving diagnosis of skin diseases by combining deep neural network and human knowledge.

Xinyuan Zhang, Shiqi Wang, Jie Liu, Cui Tao

BMC Medical Informatics Decis. Mak., 2018

Visualized Emotion Ontology: a model for representing visual cues of emotions.

Rebecca Lin, Muhammad Amith, Chen Liang, Rui Duan, Yong Chen, Cui Tao

BMC Medical Informatics Decis. Mak., 2018

Identifying direct temporal relations between time and events from clinical notes.

Hee-Jin Lee, Yaoyun Zhang, Min Jiang, Jun Xu, Cui Tao, Hua Xu

BMC Medical Informatics Decis. Mak., 2018

Introduction: selected extended articles from the 2nd International Workshop on Semantics-Powered Data Analytics (SEPDA 2017).

Zhe He, Cui Tao, Jiang Bian, Rui Zhang, Jingshan Huang

BMC Medical Informatics Decis. Mak., 2018

Extracting psychiatric stressors for suicide from social media using deep learning.

Jingcheng Du, Yaoyun Zhang, Jianhong Luo, Yuxi Jia, Qiang Wei, Cui Tao, Hua Xu

BMC Medical Informatics Decis. Mak., 2018

Assessing the practice of biomedical ontology evaluation: Gaps and opportunities.

Muhammad Amith, Zhe He, Jiang Bian, Juan Antonio Lossio-Ventura, Cui Tao

J. Biomed. Informatics, 2018

Toward a normalized clinical drug knowledge base in China - applying the RxNorm model to Chinese clinical drugs.

Li Wang, Yaoyun Zhang, Min Jiang, Jingqi Wang, Jiancheng Dong, Yun Liu, Cui Tao, Guoqian Jiang, Yi Zhou, Hua Xu

J. Am. Medical Informatics Assoc., 2018

Representing vaccine misinformation using ontologies.

Muhammad Amith, Cui Tao

J. Biomed. Semant., 2018

Comparing Pharmacovigilance Outcomes Between FAERS and EMR Data for Acute Mania Patients.

Xinyuan Zhang, Rui Duan, Jingcheng Du, Jing Huang, Yong Chen, Cui Tao

Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Exploring Temporal Patterns of Suicidal Behavior on Twitter.

Jianhong Luo, Jingcheng Du, Cui Tao, Hua Xu, Yaoyun Zhang

Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Term Standardization and Normalization for Research Domain Criteria (RDoC).

Fang Li, Guozheng Rao, Jingcheng Du, Yang Xiang, Yaoyun Zhang, Salih Selek, Jane Elizabeth Hamilton, Hua Xu, Cui Tao

Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Coordinated Evolution of Ontologies of Informed Consent.

J. Neil Otte, Cooper Stansbury, Jonathan Vajda, Frank J. Manion, Elizabeth Umberfield, Yongqun He, Marcelline R. Harris, Jihad S. Obeid, Mathias Brochhausen, William D. Duncan, Cui Tao

Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

VEO-Engine: Interfacing and Reasoning with an Emotion Ontology for Device Visual Expression.

Muhammad Amith, Rebecca Lin, Chen Liang, Yang Gong, Cui Tao

Proceedings of the HCI International 2018 - Posters' Extended Abstracts, 2018

Comparing adverse effects of Hepatitis C drugs using FAERS data.

Jing Huang, Xinyuan Zhang, Jiayi Tong, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Yong Chen, Cui Tao

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Constructing Biomedical Knowledge Graph Based on SemMedDB and Linked Open Data.

Qing Cong, Zhiyong Feng, Fang Li, Li Zhang, Guozheng Rao, Cui Tao

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

X-A-BiLSTM: a Deep Learning Approach for Depression Detection in Imbalanced Data.

Qing Cong, Zhiyong Feng, Fang Li, Yang Xiang, Guozheng Rao, Cui Tao

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

OntoKeeper: Semiotic-driven Ontology Evaluation Tool For Biomedical Ontologists.

Muhammad Amith, Frank J. Manion, Chen Liang, Marcelline R. Harris, Dennis Wang, Yongqun He, Cui Tao

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Computer Aided Diagnosis of Chest X-rays using by Combining Deep Convolutional Neural Networks.

Xinyuan Zhang, Sicheng Zhou, Luca Giancardo, Cui Tao

Proceedings of the AMIA 2018, 2018

Asthma Onset Prediction Using Structured EMR Data.

Yang Xiang, Jun Xu, Jingcheng Du, Degui Zhi, Cui Tao

Proceedings of the AMIA 2018, 2018

Identification of Rare Adverse Events with Year-varying Reporting Rates for FLU4 Vaccine in VAERS.

Jiayi Tong, Jing Huang, Jingcheng Du, Yi Cai, Cui Tao, Yong Chen

Proceedings of the AMIA 2018, 2018

Development and Validation of an Ontological Representation of the US Common Rule.

Frank J. Manion, Marcelline R. Harris, Muhamamd F. Amith, Cui Tao

Proceedings of the AMIA 2018, 2018

Construction of Drug Repurposing-oriented Alzheimer's Disease Ontology.

Fang Li, Jingcheng Du, Guozheng Rao, Cui Tao

Proceedings of the AMIA 2018, 2018

Mining Human Papillomavirus Vaccination Health Beliefs from Twitter Using Attentive Recurrent Neural Network.

Jingcheng Du, Fang Li, Yuxi Jia, Yang Xiang, Lu Tang, Sahiti Myneni, Cui Tao

Proceedings of the AMIA 2018, 2018

Development of HeartData, a Data Discovery Index Prototype for Cardiovascular data.

Jing An, Mandana Salimi, Anupama E. Gururaj, Cui Tao, Degui Zhi, Hua Xu

Proceedings of the AMIA 2018, 2018

2017

Introduction: the International Conference on Intelligent Biology and Medicine (ICIBM) 2016: special focus on medical informatics and big data.

Cui Tao, Yang Gong, Hua Xu, Zhongming Zhao

BMC Medical Informatics Decis. Mak., 2017

Leveraging machine learning-based approaches to assess human papillomavirus vaccination sentiment trends with Twitter data.

Jingcheng Du, Jun Xu, Hsing-yi Song, Cui Tao

BMC Medical Informatics Decis. Mak., 2017

A signal detection method for temporal variation of adverse effect with vaccine adverse event reporting system data.

Yi Cai, Jingcheng Du, Jing Huang, Susan S. Ellenberg, Sean Hennessy, Cui Tao, Yong Chen

BMC Medical Informatics Decis. Mak., 2017

Lightweight predicate extraction for patient-level cancer information and ontology development.

Muhammad Amith, Hsing-yi Song, Yaoyun Zhang, Hua Xu, Cui Tao

BMC Medical Informatics Decis. Mak., 2017

Using Pathfinder networks to discover alignment between expert and consumer conceptual knowledge from online vaccine content.

Muhammad Amith, Rachel Cunningham, Lara S. Savas, Julie Boom, Roger W. Schvaneveldt, Cui Tao, Trevor Cohen

J. Biomed. Informatics, 2017

Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies.

Deepak K. Sharma, Harold R. Solbrig, Cui Tao, Chunhua Weng, Christopher G. Chute, Guoqian Jiang

J. Biomed. Semant., 2017

Optimization on machine learning based approaches for sentiment analysis on HPV vaccines related tweets.

Jingcheng Du, Jun Xu, Hsing-yi Song, Xiangyu Liu, Cui Tao

J. Biomed. Semant., 2017

Modulated evaluation metrics for drug-based ontologies.

Muhammad Amith, Cui Tao

J. Biomed. Semant., 2017

Comparing Different Adverse Effects Among Multiple Drugs Using FAERS Data.

Jing Huang, Xinyuan Zhang, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Yong Chen, Cui Tao

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Comparing the Human Papillomavirus Vaccination Opinions Trends from Different Twitter User Groups with a Machine Learning Based System and Semiparametric Nonlinear Regression.

Jingcheng Du, Jing Huang, Rui Duan, Yong Chen, Cui Tao

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Expressing Biomedical Ontologies in Natural Language for Expert Evaluation.

Muhammad Amith, Frank J. Manion, Marcelline R. Harris, Yaoyun Zhang, Hua Xu, Cui Tao

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Knowledge-Based Approach for Named Entity Recognition in Biomedical Literature: A Use Case in Biomedical Software Identification.

Muhammad Amith, Yaoyun Zhang, Hua Xu, Cui Tao

Proceedings of the Advances in Artificial Intelligence: From Theory to Practice, 2017

Post-marketing Drug Safety Evaluation Using Data Mining Based on FAERS.

Rui Duan, Xinyuan Zhang, Jingcheng Du, Jing Huang, Cui Tao, Yong Chen

Proceedings of the Data Mining and Big Data - Second International Conference, 2017

Leveraging Machine Learning Based Approaches to Assess Human Papillomavirus Vaccination Sentiment Trends with Twitter.

Jingcheng Du, Jun Xu, Hsing-yi Song, Cui Tao

Proceedings of the Summit on Clinical Research Informatics, 2017

Correlating Lab Test Results in Clinical Notes with Structured Lab Data: A Case Study in HbA1c and Glucose.

Sijia Liu, Liwei Wang, Donna M. Ihrke, Vipin Chaudhary, Cui Tao, Chunhua Weng, Hongfang Liu

Proceedings of the Summit on Clinical Research Informatics, 2017

Computer-aided diagnosis of four common cutaneous diseases using deep learning algorithm.

Xinyuan Zhang, Shiqi Wang, Jie Liu, Cui Tao

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Designing an ontology for emotion-driven visual representations.

Rebecca Lin, Muhammad Tuan Amith, Chen Liang, Cui Tao

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Towards practical temporal relation extraction from clinical notes: An analysis of direct temporal relations.

Hee-Jin Lee, Yaoyun Zhang, Jun Xu, Cui Tao, Hua Xu, Min Jiang

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

A pilot study of mining association between psychiatric stressors and symptoms in tweets.

Jingcheng Du, Yaoyun Zhang, Cui Tao, Hua Xu

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

A Twitter Study of the Relationship between the Geographic Variations of HPV Vaccination Rates and Online Information in the United States.

Hansi Zhang, Yunpeng Zhao, Christopher Wheldon, Xinsong Du, Terrell Brown, Yi Guo, Stephanie Staras, Jingcheng Du, Cui Tao, Jiang Bian

Proceedings of the AMIA 2017, 2017

Big Data to Knowledge (BD2K) and the Application of Metadata.

Guoqian Jiang, Walter S. Campbell, Timothy Clark, Cui Tao, Mark A. Musen

Proceedings of the AMIA 2017, 2017

From Scoping Review to Metadata: An Evidence-Based Approach to Identifying Informed Consent Metadata for Biorepositories.

Marcelline R. Harris, Frank J. Manion, Hsing-yi Song, Yongqun He, Muhamamd F. Amith, Cui Tao

Proceedings of the AMIA 2017, 2017

2016

Temporal data representation, normalization, extraction, and reasoning: A review from clinical domain.

Mohcine Madkour, Driss Benhaddou, Cui Tao

Comput. Methods Programs Biomed., 2016

Erratum to: Extracting drug-enzyme relation from literature as evidence for drug drug interaction.

Yaoyun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu, Jingqi Wang, Cui Tao, Lang Li, Hua Xu

J. Biomed. Semant., 2016

Extracting drug-enzyme relation from literature as evidence for drug drug interaction.

Yaoyun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu, Jingqi Wang, Cui Tao, Lang Li, Hua Xu

J. Biomed. Semant., 2016

Vaccine and Drug Ontology Studies (VDOS 2014).

Cui Tao, Yongqun He, Sivaram Arabandi

J. Biomed. Semant., 2016

Trivalent influenza vaccine adverse symptoms analysis based on MedDRA terminology using VAERS data in 2011.

Jingcheng Du, Yi Cai, Yong Chen, Cui Tao

J. Biomed. Semant., 2016

Towards a HPV Vaccine Knowledgebase for Patient Education Content.

Dennis Wang, Rachel Cunningham, Julie Boom, Muhammad Amith, Cui Tao

Proceedings of the Nursing Informatics 2016 - eHealth for All: Every Level Collaboration, 2016

Semantic Web Ontology and Data Integration: a Case Study in Aiding Psychiatric Drug Repurposing.

Chen Liang, Jingchun Sun, Cui Tao

Proceedings of the Summit on Clinical Research Informatics, 2016

A representational analysis of a temporal indeterminancy display in clinical events.

Mohcine Madkour, Hsing-yi Song, Jingcheng Du, Cui Tao

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery.

Hua Xu, Jeffrey S. Grethe, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Yueling Li, Ibrahim Burak Özyurt, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado

Proceedings of the AMIA 2016, 2016

A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System.

Jeffrey S. Grethe, Ibrahim Burak Özyurt, Hua Xu, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado

Proceedings of the AMIA 2016, 2016

2015

Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes.

María Del Carmen Legaz-García, Marcos Menárguez Tortosa, Jesualdo Tomás Fernández-Breis, Christopher G. Chute, Cui Tao

J. Am. Medical Informatics Assoc., 2015

Identification of sex-associated network patterns in Vaccine-Adverse Event Association Network in VAERS.

Yuji Zhang, Puqiang Wu, Yi Luo, Cui Tao

J. Biomed. Semant., 2015

Developing VISO: Vaccine Information Statement Ontology for patient education.

Muhammad Amith, Yang Gong, Rachel Cunningham, Julie Boom, Cui Tao

J. Biomed. Semant., 2015

Colorectal cancer drug target prediction using ontology-based inference and network analysis.

Cui Tao, Jingchun Sun, W. Jim Zheng, Junjie Chen, Hua Xu

Database J. Biol. Databases Curation, 2015

Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature.

Guocai Chen, Jieyi Zhao, Trevor Cohen, Cui Tao, Jingchun Sun, Hua Xu, Elmer V. Bernstam, Andrew Lawson, Jia Zeng, Amber M. Johnson, Vijaykumar Holla, Ann M. Bailey, Humberto Lara-Guerra, Beate Litzenburger, Funda Meric-Bernstam, W. Jim Zheng

Database J. Biol. Databases Curation, 2015

A Web Application Towards Semiotic-based Evaluation of Biomedical Ontologies.

Muhammad Amith, Cui Tao

Proceedings of International Workshop on Biomedical Data Mining, 2015

Trivalent Influenza Vaccine Adverse Event Analysis Based On MedDRA System Organ Classes Using VAERS Data.

Cui Tao, Jingcheng Du, Yi Cai, Yong Chen

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Towards an Ontology-driven Framework to Enable Development of Personalized mHealth Solutions for Cancer Survivors' Engagement in Healthy Living.

Sahiti Myneni, Muhammad Amith, Yimin Geng, Cui Tao

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Semantic Web Ontology and Data Integration: a Case Study in Aiding Psychiatric Drug Repurposing.

Chen Liang, Jingchun Sun, Cui Tao

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Analysis of empty responses from electronic resources in infobutton managers.

Jie Long, Nathan C. Hulse, Cui Tao

Proceedings of the AMIA 2015, 2015

Quality Assurance of Cancer Study Common Data Elements Using A Post-Coordination Approach.

Guoqian Jiang, Harold R. Solbrig, Eric Prud'hommeaux, Cui Tao, Chunhua Weng, Christopher G. Chute

Proceedings of the AMIA 2015, 2015

Model Checking for Verification of Interactive Health IT Systems.

Keith A. Butler, Eric Mercer, Ali Bahrami, Cui Tao

Proceedings of the AMIA 2015, 2015

2014

Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network.

Yuji Zhang, Cui Tao, Guoqian Jiang, Asha A. Nair, Jian Su, Christopher G. Chute, Hongfang Liu

J. Biomed. Semant., 2014

A 2013 workshop: vaccine and drug ontology studies (VDOS 2013).

Cui Tao, Yongqun He, Sivaram Arabandi

J. Biomed. Semant., 2014

OAE: The Ontology of Adverse Events.

Yongqun He, Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Abra Guo, Shelley Zhang, Desikan Jagannathan, Luca Toldo, Cui Tao, Barry Smith

J. Biomed. Semant., 2014

A use case study on late stent thrombosis for ontology-based temporal reasoning and analysis.

Kimberly Clark, Deepak K. Sharma, Rui Qin, Christopher G. Chute, Cui Tao

J. Biomed. Semant., 2014

Linked vaccine adverse event data from VAERS for biomedical data analysis and longitudinal studies.

Cui Tao, Puqiang Wu, Yi Luo, Yuji Zhang

BioData Min., 2014

GSO: A Semantic Web Ontology to Capture 3D Genome Structure.

W. Jim Zheng, Jingcheng Du, Jijun Tang, Cui Tao

Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

A Work Domain Ontology for Modeling Emergency Department Workflow.

Cui Tao, Nnaemeka Okafor, Amit M. Mehta, Charles L. Maddow, David J. Robinson, Brent King, Jiajie Zhang, Amy Franklin

Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

Exploring the Pharmacogenomics Knowledge Base (PharmGKB) for Repositioning Breast Cancer Drugs by Leveraging Web Ontology Language (OWL) and Cheminformatics Approaches.

Qian Zhu, Cui Tao, Feichen Shen, Christopher G. Chute

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

Linked Vaccine Adverse Event Data Representation from VAERS for Biomedical Informatics Research.

Cui Tao, Puqiang Wu, Yuji Zhang

Proceedings of the Trends and Applications in Knowledge Discovery and Data Mining, 2014

A Prototype Mobile Virtual Assistant for Semantic-Based Vaccine Information Retrieval.

Muhammad Amith, Cui Tao

Proceedings of the Smart Health - International Conference, 2014

Pharmacological Class Data Representation in the Web Ontology Language (OWL).

Qian Zhu, Cui Tao

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Ontology-based Normalization for Disease-Lab test Relation Extraction.

Yaoyun Zhang, Jingqi Wang, Cui Tao, Hua Xu

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Drug Target Prediction for Colorectal Cancer by Combining Ontology and Network Approaches.

Cui Tao, Jingchun Sun, W. Jim Zheng, Junjie Chen, Hua Xu

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Using Ontology Fingerprints to Disambiguate Gene Name Entities in the Biomedical Literature.

Guocai Chen, Jieyi Zhao, Trevor Cohen, Cui Tao, Jingchun Sun, Hua Xu, Elmer V. Bernstam, Jia Zeng, Amber M. Johnson, Vijaykumar Holla, Ann Balley, Funda Meric-Bernstam, W. Jim Zheng

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

An Initial Framework for an Ontology-based Mobile Application for Vaccine Information Retrieval and Education.

Muhammad Amith, Cui Tao

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data.

Feichen Shen, Dingcheng Li, Hongfang Liu, Yugyung Lee, Jyotishman Pathak, Christopher G. Chute, Cui Tao

Proceedings of IEEE-EMBS International Conference on Biomedical and Health Informatics, 2014

An Integrative Framework for Drug Target Prediction and Repurposing.

Jingchun Sun, Cui Tao, Kevin W. Zhu, W. Jim Zheng, Junjie Chen, Hua Xu

Proceedings of the AMIA 2014, 2014

Enabling Locally-Developed Content For Access Through the Infobutton By Means of Automated Concept Annotation.

Nathan C. Hulse, Jie Long, Xiaomin Xu, Cui Tao

Proceedings of the AMIA 2014, 2014

Enhancing the TURF Framework with a Workflow Ontology.

Craig Harrington, Cui Tao, Keith A. Butler, Jiajie Zhang

Proceedings of the AMIA 2014, 2014

2013

Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: A case study.

Qian Zhu, Robert R. Freimuth, Zonghui Lian, Scott Bauer, Jyotishman Pathak, Cui Tao, Matthew J. Durski, Christopher G. Chute

J. Biomed. Informatics, 2013

Semantator: Semantic annotator for converting biomedical text to linked data.

Cui Tao, Dezhao Song, Deepak K. Sharma, Christopher G. Chute

J. Biomed. Informatics, 2013

Terminology representation guidelines for biomedical ontologies in the semantic web notations.

Cui Tao, Jyotishman Pathak, Harold R. Solbrig, Wei-Qi Wei, Christopher G. Chute

J. Biomed. Informatics, 2013

A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data.

Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Qian Zhu, Deepak K. Sharma, Jyotishman Pathak, Stanley M. Huff, Christopher G. Chute

J. Am. Medical Informatics Assoc., 2013

Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification.

Sunghwan Sohn, Kavishwar B. Wagholikar, Dingcheng Li, Siddhartha Jonnalagadda, Cui Tao, Ravikumar Komandur Elayavilli, Hongfang Liu

J. Am. Medical Informatics Assoc., 2013

Network-based analysis of vaccine-related associations reveals consistent knowledge with the vaccine ontology.

Yuji Zhang, Cui Tao, Yongqun He, Pradip Kanjamala, Hongfang Liu

J. Biomed. Semant., 2013

Ontology-based Temporal Analysis for Medical Device Adverse Event - A Use Case Study on Late Stent Thrombosis.

Kimberly Clark, Deepak K. Sharma, Rui Qin, Christopher G. Chute, Cui Tao

Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2013

Isosemantic Rendering of Clinical Information Using Formal Ontologies and RDF.

Catalina Martínez-Costa, Diego Boscá, María Del Carmen Legaz-García, Cui Tao, Jesualdo Tomás Fernández-Breis, Stefan Schulz, Christopher G. Chute

Proceedings of the MEDINFO 2013, 2013

Phenotyping on EHR Data Using OWL and Semantic Web Technologies.

Cui Tao, Dingcheng Li, Feichen Shen, Zonghui Lian, Jyotishman Pathak, Hongfang Liu, Christopher G. Chute

Proceedings of the Smart Health - International Conference, 2013

Analysis of Vaccine-related Networks using Semantic MEDLINE and the Vaccine Ontology.

Yuji Zhang, Cui Tao, Yongqun He, Pradip Kanjamala, Hongfang Liu

Proceedings of the ICBO2013 Workshops: International Workshop on Vaccine and Drug Ontology Studies (VDOS 2013), International Workshop on Definitions in Ontologies (DO 2013), part of the Semantic Trilogy 2013 , Montreal, Quebec, Canada, July 6th, 2013

An integrative computational approach to identify disease-specific networks from PubMed literature information.

Yuji Zhang, Dingcheng Li, Cui Tao, Feichen Shen, Hongfang Liu

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Introduction and Implementation of Common Terminology Services 2 (CTS2).

Cui Tao, Harold R. Solbrig, Craig Stancl, Kevin J. Peterson, Cory M. Endle, Scott Bauer, Deepak K. Sharma, Christopher G. Chute

Proceedings of the AMIA 2013, 2013

Adding Search Engine Functionality to Infobutton Manager Platform.

Jie Long, Nathan C. Hulse, Cui Tao, Guilherme Del Fiol

Proceedings of the AMIA 2013, 2013

Coreference Resolution from Medical Corpus with Topic Modeling.

Dingcheng Li, Liwei Wang, Cui Tao, Christopher G. Chute, Hongfang Liu

Proceedings of the AMIA 2013, 2013

Combining Infobuttons and Semantic Web Rules for Identifying Patterns and Delivering Highly-Personalized Education Materials.

Nathan C. Hulse, Jie Long, Cui Tao

Proceedings of the AMIA 2013, 2013

2012

Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project.

Susan Rea, Jyotishman Pathak, Guergana K. Savova, Thomas A. Oniki, Les Westberg, Calvin E. Beebe, Cui Tao, Craig G. Parker, Peter J. Haug, Stanley M. Huff, Christopher G. Chute

J. Biomed. Informatics, 2012

Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis.

Stephen T. Wu, Hongfang Liu, Dingcheng Li, Cui Tao, Mark A. Musen, Christopher G. Chute, Nigam H. Shah

J. Am. Medical Informatics Assoc., 2012

Ontology-based time information representation of vaccine adverse events in VAERS for temporal analysis.

Cui Tao, Yongqun He, Hannah Yang, Gregory A. Poland, Christopher G. Chute

J. Biomed. Semant., 2012

A 2012 Workshop: Vaccine and Drug Ontology in the Study of Mechanism and Effect (VDOSME 2012).

Yongqun He, Luca Toldo, Gully Burns, Cui Tao, Darrell R. Abernethy

J. Biomed. Semant., 2012

Towards event sequence representation, reasoning and visualization for EHR data.

Cui Tao, Krist Wongsuphasawat, Kimberly Clark, Catherine Plaisant, Ben Shneiderman, Christopher G. Chute

Proceedings of the ACM International Health Informatics Symposium, 2012

A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data.

Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Jyotishman Pathak, Qian Zhu, Deepak K. Sharma, Stanley M. Huff, Christopher G. Chute

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

Optimizing semantic MEDLINE for translational science studies using semantic web technologies.

Cui Tao, Yuji Zhang, Guoqian Jiang, Matt-Mouley Bouamrane, Christopher G. Chute

Proceedings of the 2nd International Workshop on Managing Interoperability and compleXity in Health Systems, 2012

Managing interoperability and compleXity in health systems - MIXHS'12.

Cui Tao, Matt-Mouley Bouamrane

Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012

Modeling UIMA type system using web ontology language: towards interoperability among UIMA-based NLP tools.

Hongfang Liu, Stephen T. Wu, Cui Tao, Christopher G. Chute

Proceedings of the 2nd International Workshop on Managing Interoperability and compleXity in Health Systems, 2012

An overview of electronic health information management systems quality assessment.

Matt-Mouley Bouamrane, Frances S. Mair, Cui Tao

Proceedings of the 2nd International Workshop on Managing Interoperability and compleXity in Health Systems, 2012

Ontology-Based Temporal Relation Modeling with MapReduce Latent Dirichlet Allocations for Big EHR Data.

Dingcheng Li, Cui Tao, Hongfang Liu, Christopher G. Chute

Proceedings of the 2012 Second International Conference on Cloud and Green Computing, 2012

Common Terminology Services 2 (CTS2) for Biomedical Community.

Cui Tao, Harold R. Solbrig, Pradip Kanjamala, Kevin J. Peterson, Craig Stancle, Christopher G. Chute

Proceedings of the AMIA 2012, 2012

2011

Toward Answering Time-Related Questions from Adverse Event Reports Using Ontology-Based Approaches.

Cui Tao, Guoqian Jiang, Kimberly Clark, Deepak K. Sharma, Christopher G. Chute

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Managing interoperability and complexity inhealth systems: MIXHS'11 workshop summary.

Matt-Mouley Bouamrane, Cui Tao

Proceedings of the 20th ACM Conference on Information and Knowledge Management, 2011

Wireless extensions of CANBUS in industrial applications.

Wen Chen, Lei Kong, Yun Wu, Xiaohui Liao, Cui Tao

Proceedings of the 4th International Conference on Biomedical Engineering and Informatics, 2011

Proposed SKOS Extensions for BioPortal Terminology Services.

Cui Tao, Natalya Fridman Noy, Harold R. Solbrig, Nigam H. Shah, Mark A. Musen, Christopher G. Chute

Proceedings of the Semantic Web - Joint International Semantic Technology Conference, 2011

2010

Time-Oriented Question Answering from Clinical Narratives Using Semantic-Web Techniques.

Cui Tao, Harold R. Solbrig, Deepak K. Sharma, Wei-Qi Wei, Guergana K. Savova, Christopher G. Chute

Proceedings of the Semantic Web - ISWC 2010 - 9th International Semantic Web Conference, 2010

KBB: A Knowledge-Bundle Builder for Research Studies.

David W. Embley, Stephen W. Liddle, Deryle W. Lonsdale, Aaron P. Stewart, Cui Tao

Proceedings of the Advances in Conceptual Modeling - Applications and Challenges, 2010

2009

Automatic hidden-web table interpretation, conceptualization, and semantic annotation.

Cui Tao, David W. Embley

Data Knowl. Eng., 2009

FOCIH: Form-Based Ontology Creation and Information Harvesting.

Cui Tao, David W. Embley, Stephen W. Liddle

Proceedings of the Conceptual Modeling, 2009

2008

A Conceptual-Model-Based Computational Alembic for a Web of Knowledge.

David W. Embley, Stephen W. Liddle, Deryle W. Lonsdale, George Nagy, Yuri A. Tijerino, Robert Clawson, Jordan Crabtree, Yihong Ding, Piyushee Jha, Zonghui Lian, Stephen Lynn, Raghav K. Padmanabhan, Jeff Peters, Cui Tao, Robby Watts, Charla Woodbury, Andrew Zitzelberger

Proceedings of the Conceptual Modeling, 2008

A Web of Knowledge: A Conceptual-Modeling Perspective.

David W. Embley, Stephen W. Liddle, Cui Tao

Proceedings of the Evolution of Conceptual Modeling, 2008

2007

Seed-Based Generation of Personalized Bio-ontologies for Information Extraction.

Cui Tao, David W. Embley

Proceedings of the Advances in Conceptual Modeling - Foundations and Applications, 2007

Automatic Hidden-Web Table Interpretation by Sibling Page Comparison.

Cui Tao, David W. Embley

Proceedings of the Conceptual Modeling, 2007

2006

Toward Making Online Biological Data Machine Understandable.

Cui Tao

Proceedings of the Semantic Web - ISWC 2006, 5th International Semantic Web Conference, 2006

Automatic Creation of Web Services from Extraction Ontologies.

Cui Tao, Yihong Ding, Deryle W. Lonsdale

Proceedings of the Advances in Conceptual Modeling - Theory and Practice, 2006

2005

Automating the extraction of data from HTML tables with unknown structure.

David W. Embley, Cui Tao, Stephen W. Liddle

Data Knowl. Eng., 2005

2003

Speaker-independent speech recognition based on fast neural network.

Cui Tao, Taiyi Zhang

Int. J. Artif. Intell. Tools, 2003

2002

Automatically Extracting Ontologically Specified Data from HTML Tables of Unknown Structure.

David W. Embley, Cui Tao, Stephen W. Liddle

Proceedings of the Conceptual Modeling, 2002