Alexey I. Nesvizhskii

According to our database, Alexey I. Nesvizhskii authored at least 12 papers between 2006 and 2018.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2018

The SysteMHC Atlas project.

Wenguang Shao, Patrick G. A. Pedrioli, Witold Wolski, Christian Scurtescu, Emanuel Schmid, Juan Antonio Vizcaíno, Mathieu Courcelles, Heiko Schuster, Daniel Kowalewski, Fabio Marino, Cecilia S. Lindestam Arlehamn, Kerrie Vaughan, Bjoern Peters, Alessandro Sette, Tom H. M. Ottenhoff, Krista E. Meijgaarden, Natalie Nieuwenhuizen, Stefan H. E. Kaufmann, Ralph Schlapbach, John C. Castle, Alexey I. Nesvizhskii, Morten Nielsen, Eric W. Deutsch, David S. Campbell, Robert L. Moritz, Roman A. Zubarev, Anders Jimmy Ytterberg, Anthony W. Purcell, Miguel Marcilla, Alberto Paradela, Qi Wang, Catherine E. Costello, Nicola Ternette, Peter A. van Veelen, Cécile A. C. M. van Els, Albert J. R. Heck, Gustavo A. de Souza, Ludvig M. Sollid, Arie Admon, Stefan Stevanovic, Hans-Georg Rammensee, Pierre Thibault, Claude Perreault, Michal Bassani-Sternberg, Ruedi Aebersold, Etienne Caron

Nucleic Acids Res., 2018

2017

BioContainers: an open-source and community-driven framework for software standardization.

Felipe da Veiga Leprevost, Björn A. Grüning, Saulo Aflitos, Hannes L. Röst, Julian Uszkoreit, Harald Barsnes, Marc Vaudel, Pablo A. Moreno, Laurent Gatto, Jonas Weber, Mingze Bai, Rafael C. Jiménez, Timo Sachsenberg, Julianus Pfeuffer, Roberto Vera Alvarez, Johannes Griss, Alexey I. Nesvizhskii, Yasset Pérez-Riverol

Bioinform., 2017

2016

Two-pass alignment improves novel splice junction quantification.

Brendan A. Veeneman, Sudhanshu Shukla, Saravana M. Dhanasekaran, Arul M. Chinnaiyan, Alexey I. Nesvizhskii

Bioinform., 2016

2015

LuciPHOr2: site localization of generic post-translational modifications from tandem mass spectrometry data.

Damian Fermin, Dmitry Avtonomov, Hyungwon Choi, Alexey I. Nesvizhskii

Bioinform., 2015

2013

Hands-on Workshops as An Effective Means of Learning Advanced Technologies Including Genomics, Proteomics and Bioinformatics.

Nichole Reisdorph, Robert Stearman, Katerina J. Kechris, Tzu Lip Phang, Richard Reisdorph, Jessica E. Prenni, David J. Erle, Christopher Coldren, Kevin L. Schey, Alexey I. Nesvizhskii, Marc Geraci

Genom. Proteom. Bioinform., 2013

Sparsely correlated hidden Markov models with application to genome-wide location studies.

Hyungwon Choi, Damian Fermin, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin

Bioinform., 2013

Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.

Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean D. Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl

Big Data, 2013

2012

A statistical model-building perspective to identification of MS/MS spectra with PeptideProphet.

Kelvin Ma, Olga Vitek, Alexey I. Nesvizhskii

BMC Bioinform., 2012

2010

Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology.

Kang Ning, Hoong Kee Ng, Sriganesh Srihari, Hon Wai Leong, Alexey I. Nesvizhskii

BMC Bioinform., 2010

The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment.

Kang Ning, Alexey I. Nesvizhskii

BMC Bioinform., 2010

2009

Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data.

Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin

Bioinform., 2009

2006

The PeptideAtlas project.

Frank Desiere, Eric W. Deutsch, Nichole L. King, Alexey I. Nesvizhskii, Parag Mallick, Jimmy K. Eng, Sharon Chen, James Eddes, Sandra N. Loevenich, Ruedi Aebersold

Nucleic Acids Res., 2006