Roberto Vera

According to our database, Roberto Vera authored at least 12 papers between 2013 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

ElasticBLAST: accelerating sequence search via cloud computing.

Christiam Camacho, Grzegorz M. Boratyn, Victor Joukov, Roberto Vera Alvarez, Thomas L. Madden

BMC Bioinform., December, 2023

2021

COG database update: focus on microbial diversity, model organisms, and widespread pathogens.

Michael Y. Galperin, Yuri I. Wolf, Kira S. Makarova, Roberto Vera Alvarez, David Landsman, Eugene V. Koonin

Nucleic Acids Res., 2021

2019

LitSense: making sense of biomedical literature at sentence level.

Alexis Allot, Qingyu Chen, Sun Kim, Roberto Vera Alvarez, Donald C. Comeau, W. John Wilbur, Zhiyong Lu

Nucleic Acids Res., 2019

TPMCalculator: one-step software to quantify mRNA abundance of genomic features.

Roberto Vera Alvarez, Lorinc Sándor Pongor, Leonardo Mariño-Ramírez, David Landsman

Bioinform., 2019

2018

SNPDelScore: combining multiple methods to score deleterious effects of noncoding mutations in the human genome.

Roberto Vera Alvarez, Shan Li, David Landsman, Ivan Ovcharenko

Bioinform., 2018

2017

BioContainers: an open-source and community-driven framework for software standardization.

Felipe da Veiga Leprevost, Björn A. Grüning, Saulo Aflitos, Hannes L. Röst, Julian Uszkoreit, Harald Barsnes, Marc Vaudel, Pablo A. Moreno, Laurent Gatto, Jonas Weber, Mingze Bai, Rafael C. Jiménez, Timo Sachsenberg, Julianus Pfeuffer, Roberto Vera Alvarez, Johannes Griss, Alexey I. Nesvizhskii, Yasset Pérez-Riverol

Bioinform., 2017

Workflow and web application for annotating NCBI BioProject transcriptome data.

Roberto Vera Alvarez, Newton Medeiros Vidal, Gina A. Garzón-Martínez, Luz S. Barrero, David Landsman, Leonardo Mariño-Ramírez

Database J. Biol. Databases Curation, 2017

2014

Large scale annotation of biological data using integrated database managament tools

Roberto Vera

PhD thesis, 2014

PTMTreeSearch: a novel two-stage tree-search algorithm with pruning rules for the identification of post-translational modification of proteins in MS/MS spectra.

Attila Kertész-Farkas, Beáta Reiz, Roberto Vera, Michael P. Myers, Sándor Pongor

Bioinform., 2014

2013

A UML-based Approach to Design Parallel and Distributed Applications.

Yasset Pérez-Riverol, Roberto Vera Alvarez

CoRR, 2013

<i>JBioWH</i>: an open-source Java framework for bioinformatics data integration.

Roberto Vera, Yasset Pérez-Riverol, Sonia Pérez, Balázs Ligeti, Attila Kertész-Farkas, Sándor Pongor

Database J. Biol. Databases Curation, 2013

Predicting effective drug combinations via network propagation.

Balázs Ligeti, Roberto Vera, Gergely Lukács, Balazs Györffy, Sándor Pongor

Proceedings of the 2013 IEEE Biomedical Circuits and Systems Conference (BioCAS), Rotterdam, The Netherlands, October 31, 2013