Isaac S. Kohane

According to our database1, Isaac S. Kohane
  • authored at least 138 papers between 1993 and 2018.
  • has a "Dijkstra number"2 of four.

Timeline

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Bibliography

2018
Enabling phenotypic big data with PheNorm.
JAMIA, 2018

Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API.
Bioinformatics, 2018

2017
Surrogate-assisted feature extraction for high-throughput phenotyping.
JAMIA, 2017

Creating a Patient Information Commons from Multiple Research Informatics Platforms.
Proceedings of the Summit on Clinical Research Informatics, 2017

Subtype Discovery for Autism Spectrum Disorder by Comorbidity Analysis.
Proceedings of the AMIA 2017, 2017

High-throughput Phenotyping via Denoised Normal Mixture Transformation.
Proceedings of the AMIA 2017, 2017

2016
A model-driven methodology for exploring complex disease comorbidities applied to autism spectrum disorder and inflammatory bowel disease.
Journal of Biomedical Informatics, 2016

SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care.
JAMIA, 2016

SMART on FHIR: a standards-based, interoperable apps platform for electronic health records.
JAMIA, 2016

ksRepo: a generalized platform for computational drug repositioning.
BMC Bioinformatics, 2016

Reproducible and Shareable Quantifications of Pathogenicity.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

Session Introduction.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

Characterizing the Fever Effect in Autism Spectrum Disorder.
Proceedings of the AMIA 2016, 2016

The Spectrum of Insomnia-Associated Comorbidities in an Electronic Medical Records Cohort.
Proceedings of the AMIA 2016, 2016

2015
Increasing the efficiency of trial-patient matching: automated clinical trial eligibility Pre-screening for pediatric oncology patients.
BMC Med. Inf. & Decision Making, 2015

Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources.
JAMIA, 2015

SMART on FHIR Genomics: facilitating standardized clinico-genomic apps.
JAMIA, 2015

Demonstrating the Advantages of Applying Data Mining Techniques on Time-Dependent Electronic Medical Records.
Proceedings of the AMIA 2015, 2015

2014
Brief communication: Scalable Collaborative Infrastructure for a Learning Healthcare System (SCILHS): Architecture.
JAMIA, 2014

Are Meaningful Use Stage 2 certified EHRs ready for interoperability? Findings from the SMART C-CDA Collaborative.
JAMIA, 2014

SecurityEmpire: Development and Evaluation of a Digital Game to Promote Cybersecurity Education.
Proceedings of the 2014 USENIX Summit on Gaming, 2014

Improving the Review of Individual Patients in a Clinical Data Repository.
Proceedings of the AMIA 2014, 2014

Informatics for Integrating Biology and the Bedside (I2b2) Clinical Trials (CT) Patient Ascertainment Suite.
Proceedings of the AMIA 2014, 2014

Smart on FHIR.
Proceedings of the AMIA 2014, 2014

2013
Improved de-identification of physician notes through integrative modeling of both public and private medical text.
BMC Med. Inf. & Decision Making, 2013

Integrating the CCDA for Real-Time Patient Data in the i2b2 Platform.
Proceedings of the AMIA 2013, 2013

Organization and Transformation of Next-Generation Sequencing Data for Use within i2b2.
Proceedings of the AMIA 2013, 2013

2012
Technical desiderata for the integration of genomic data into Electronic Health Records.
Journal of Biomedical Informatics, 2012

The SMART Platform: early experience enabling substitutable applications for electronic health records.
JAMIA, 2012

A translational engine at the national scale: informatics for integrating biology and the bedside.
JAMIA, 2012

Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome.
Bioinformatics, 2012

Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome.
Bioinformatics, 2012

Integrating Substitutable Medical Apps, Reusable Technologies (SMART) in the i2b2 Platform.
Proceedings of the AMIA 2012, 2012

Apps to display patient data, making SMART available in the i2b2 platform.
Proceedings of the AMIA 2012, 2012

Supporting Population Queries and Clinical Trials in i2b2 with SMART.
Proceedings of the AMIA 2012, 2012

2011
Information Technology research challenges for healthcare: from discovery to delivery.
SIGHIT Record, 2011

Inferring cell cycle feedback regulation from gene expression data.
Journal of Biomedical Informatics, 2011

Strategies for maintaining patient privacy in i2b2.
JAMIA, 2011

Marco Ramoni: an appreciation of academic achievement.
JAMIA, 2011

BioNOT: A searchable database of biomedical negated sentences.
BMC Bioinformatics, 2011

Automated validation of genetic variants from large databases: ensuring that variant references refer to the same genomic locations.
Bioinformatics, 2011

2010
Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2).
JAMIA, 2010

A novel approach to investigate tissue-specific trinucleotide repeat instability.
BMC Systems Biology, 2010

Practical Health Information Exchange using a Personally Controlled Health Record.
Proceedings of the 1st USENIX Workshop on Health Security and Privacy, 2010

2009
Application of Information Technology: The Shared Health Research Information Network (SHRINE): A Prototype Federated Query Tool for Clinical Data Repositories.
JAMIA, 2009

Research Paper: Prediction of Chronic Obstructive Pulmonary Disease (COPD) in Asthma Patients Using Electronic Medical Records.
JAMIA, 2009

Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance.
Bioinformatics, 2009

Interacting with eHealth: towards grand challenges for HCI.
Proceedings of the 27th International Conference on Human Factors in Computing Systems, 2009

2008
Viewpoint Paper: Identifying Patient Smoking Status from Medical Discharge Records.
JAMIA, 2008

Letters to the Editor: No Structure Before Its Time.
JAMIA, 2008

Characterization of Patients who Suffer Asthma Exacerbations using Data Extracted from Electronic Medical Records.
Proceedings of the AMIA 2008, 2008

2007
Model Formulation: A Self-scaling, Distributed Information Architecture for Public Health, Research, and Clinical Care.
JAMIA, 2007

Architecture of the Open-source Clinical Research Chart from Informatics for Integrating Biology and the Bedside.
Proceedings of the AMIA 2007, 2007

2006
Lower expression of genes near microRNA in C. elegans germline.
BMC Bioinformatics, 2006

START: an automated tool for serial analysis of chromatin occupancy data.
Bioinformatics, 2006

Dynamic Bayesian Networks in Modelling Cellular Systems: a Critical Appraisal on Simulated Data.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

Integration of the Personally Controlled Electronic Medical Record into a Regional and Data Exchange: A National Demonstration.
Proceedings of the AMIA 2006, 2006

Integration of Clinical and Genetic Data in the i2b2 Architecture.
Proceedings of the AMIA 2006, 2006

Mapping Tool for Maintaining Vocabulary Relationships.
Proceedings of the AMIA 2006, 2006

2005
The MAPPER database: a multi-genome catalog of putative transcription factor binding sites.
Nucleic Acids Research, 2005

Model Formulation: The PING Personally Controlled Electronic Medical Record System: Technical Architecture.
JAMIA, 2005

Position Paper: Wireless Technology Infrastructures for Authentication of Patients: PKI that Rings.
JAMIA, 2005

Research Paper: Parents as Partners in Obtaining the Medication History.
JAMIA, 2005

Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks.
BMC Bioinformatics, 2005

MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
BMC Bioinformatics, 2005

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.
BMC Bioinformatics, 2005

CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays.
Bioinformatics, 2005

DITTO - a Tool for Identification of Patient Cohorts from the Text of Physician Notes in the Electronic Medical Record.
Proceedings of the AMIA 2005, 2005

Reverse Geocoding: Concerns about Patient Confidentiality in the Display of Geospatial Health Data.
Proceedings of the AMIA 2005, 2005

2004
Application of Information Technology: The Asthma Kiosk: A Patient-centered Technology for Collaborative Decision Support in the Emergency Department.
JAMIA, 2004

White Paper: Training the Next Generation of Informaticians: The Impact of "BISTI" and Bioinformatics - A Report from the American College of Medical Informatics.
JAMIA, 2004

A SNP-centric database for the investigation of the human genome.
BMC Bioinformatics, 2004

Quantifying the relationship between co-expression, co-regulation and gene function.
BMC Bioinformatics, 2004

A Submission Model for Use in the Indexing, Searching, and Retrieval of Distributed Pathology Case and Tissue Specimens.
Proceedings of the MEDINFO 2004, 2004

2003
Editorial: Methods in Functional Genomics.
Machine Learning, 2003

Reproducibility of gene expression across generations of Affymetrix microarrays.
BMC Bioinformatics, 2003

PGAGENE: integrating quantitative gene-specific results from the NHLBI Programs for Genomic Applications.
Bioinformatics, 2003

Human Genome Variation: Haplotypes, Linkage Disequilibrium, and Populations - Session Introduction.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

Localization and Characterization of Mouse-Human Alignments Within the Human Genome. Does Evolutionary Conservation Suggest Functional Importance?
Proceedings of the AMIA 2003, 2003

2002
Visualization and evaluation of clusters for exploratory analysis of gene expression data.
Journal of Biomedical Informatics, 2002

Brief Review: The Contributions of Biomedical Informatics to the Fight Against Bioterrorism.
JAMIA, 2002

SNPper: retrieval and analysis of human SNPs.
Bioinformatics, 2002

Comparing expression profiles of genes with similar promoter regions.
Bioinformatics, 2002

Analysis of matched mRNA measurements from two different microarray technologies.
Bioinformatics, 2002

Human Genome Variation: Disease, Drug Response, and Clinical Phenotypes - Session Introduction.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

Linking gene expression data with patient survival times using partial least squares.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

CHIP TUNER: a web tool for evidence-based noise reduction in gene discovery.
Proceedings of the AMIA 2002, 2002

An unsupervised self-optimizing gene clustering algorithm.
Proceedings of the AMIA 2002, 2002

Accessing genomic data through XML-based remote procedure calls.
Proceedings of the AMIA 2002, 2002

Patient-controlled Pediatric Immunization Records.
Proceedings of the AMIA 2002, 2002

Maximizing Data Portability in Patient-controlled Longitudinal Medical Records.
Proceedings of the AMIA 2002, 2002

Computerized reminders to physicians in the emergency department: a web-based system to report late-arriving abnormal laboratory results.
Proceedings of the AMIA 2002, 2002

2001
Reply.
Journal of Biomedical Informatics, 2001

Extracting Knowledge from Dynamics in Gene Expression.
Journal of Biomedical Informatics, 2001

Comparing the Similarity of Time-Series Gene Expression Using Signal Processing Metrics.
Journal of Biomedical Informatics, 2001

The Personal Internetworked Notary and Guardian.
I. J. Medical Informatics, 2001

Human Genome Variation: Linking Genotypes to Clinical Phenotypes - Session Introduction.
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

On Reporting Fold Differences.
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

Unsupervised Learning from Complex Data: The Matrix Incision Tree Algorithm.
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

Determining Significant Fold Differences in Gene Expression Analysis.
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

Optimal Data Entry by Patients: Effects of Interface Structure and Design.
Proceedings of the MEDINFO 2001, 2001

Building ICU artifact detection models with more data in less time.
Proceedings of the AMIA 2001, 2001

A web-based tool to retrieve human genome polymorphisms from public databases.
Proceedings of the AMIA 2001, 2001

2000
Application of Information Technology: Temporal Expressiveness in Querying a Time-stamp - based Clinical Database.
JAMIA, 2000

Bioinformatics and Clinical Informatics: The Imperative to Collaborate.
JAMIA, 2000

Implementation of an electronic medical record system in a pediatric psychopharmacology program.
I. J. Medical Informatics, 2000

Multiple signal integration by decision tree induction to detect artifacts in the neonatal intensive care unit.
Artificial Intelligence in Medicine, 2000

Development of a Parent-completed Electronic Interview to Assess Dehydration.
Proceedings of the AMIA 2000, 2000

First Steps Towards Implementing an International Training Program in Medical Informatics: The Brazil/USA Project.
Proceedings of the AMIA 2000, 2000

Collating of a Distributed XML-based Medical Records into a Relational Database.
Proceedings of the AMIA 2000, 2000

Glucoweb: a case study of secure, remote biomonitoring and communication.
Proceedings of the AMIA 2000, 2000

A Distributed, Secure File System For Personal Medical Records.
Proceedings of the AMIA 2000, 2000

The new peer review.
Proceedings of the AMIA 2000, 2000

Enrolling patients into clinical trials faster using RealTime Recuiting.
Proceedings of the AMIA 2000, 2000

1999
Scaling a data retrieval and mining application to the enterprise-wide level.
Proceedings of the AMIA 1999, 1999

Healthconnect: clinical grade patient-physician communication.
Proceedings of the AMIA 1999, 1999

Artifact detection in cardiovascular time series monitoring data from preterm infants.
Proceedings of the AMIA 1999, 1999

Unsupervised knowledge discovery in medical databases using relevance networks.
Proceedings of the AMIA 1999, 1999

1998
LRTree: A Hybrid technique for Classifying Myocardial Infarction Data Containing Unknown Attribute Values.
Proceedings of the Research and Development in Knowledge Discovery and Data Mining, 1998

Linking multiple heterogeneous data sources to practice guidelines.
Proceedings of the AMIA 1998, 1998

Methodology for Computer-Assisted Prediction of Growth Hormone Deficiency in Children.
Proceedings of the AMIA 1998, 1998

Parental Input into the Emergency Department Medical Record.
Proceedings of the AMIA 1998, 1998

Data mining by clinicians.
Proceedings of the AMIA 1998, 1998

Social equity and access to the World Wide Web and E-mail: implications for design and implementation of medical applications.
Proceedings of the AMIA 1998, 1998

Health information identification and de-identification toolkit.
Proceedings of the AMIA 1998, 1998

An Alert System for ED Laboratory Test Results.
Proceedings of the AMIA 1998, 1998

HealthConnect: A Structured Communication System for Health Management.
Proceedings of the AMIA 1998, 1998

ParentLink: A Web-Based Communications Tool for Parents and Pediatricians.
Proceedings of the AMIA 1998, 1998

1997
A Java-based multi-institutional medical information retrieval system.
Proceedings of the AMIA 1997, 1997

Confidentiality of Medical Records in the W3-EMRS Project.
Proceedings of the AMIA 1997, 1997

1996
Application of Technology: Building National Electronic Medical Record Systems via the World Wide Web.
JAMIA, 1996

Managing temporal worlds for medical trend diagnosis.
Artificial Intelligence in Medicine, 1996

1995
Editorial.
Artificial Intelligence in Medicine, 1995

Clinical monitoring using regression-based trend templates.
Artificial Intelligence in Medicine, 1995

1994
Policy Forum: Against Simple Universal Health-Care Identifiers.
JAMIA, 1994

1993
Automated Trend Detection with Alternate Temporal Hypotheses.
Proceedings of the 13th International Joint Conference on Artificial Intelligence. Chambéry, France, August 28, 1993

Integration of intermittent clinical data with continuous data from bedside monitors.
Proceedings of the Sixth Annual IEEE Symposium on Computer-Based Medical Systems (CBMS'93), 1993

An Epistemology for Clinically Significant Trends.
Proceedings of the 11th National Conference on Artificial Intelligence. Washington, 1993


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