Andrew F. Neuwald

According to our database, Andrew F. Neuwald authored at least 17 papers between 1994 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2021

Reflections on the quest to obtain biological information from genomic data.

Andrew F. Neuwald

Quant. Biol., September, 2021

ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements.

Xi Chen, Andrew F. Neuwald, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan

PLoS Comput. Biol., 2021

ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach.

Xi Chen, Xu Shi, Andrew F. Neuwald, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan

BMC Bioinform., 2021

IntAPT: integrated assembly of phenotype-specific transcripts from multiple RNA-seq profiles.

Xu Shi, Andrew F. Neuwald, Xiao Wang, Tian-Li Wang, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan

Bioinform., 2021

eCOMPASS: evaluative comparison of multiple protein alignments by statistical score.

Andrew F. Neuwald, Bryan D. Kolaczkowski, Stephen F. Altschul

Bioinform., 2021

2020

Obtaining extremely large and accurate protein multiple sequence alignments from curated hierarchical alignments.

Andrew F. Neuwald, Christopher J. Lanczycki, Theresa K. Hodges, Aron Marchler-Bauer

Database J. Biol. Databases Curation, 2020

2018

Statistical investigations of protein residue direct couplings.

Andrew F. Neuwald, Stephen F. Altschul

PLoS Comput. Biol., 2018

Initial Cluster Analysis.

Stephen F. Altschul, Andrew F. Neuwald

J. Comput. Biol., 2018

2016

Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations.

Andrew F. Neuwald, Stephen F. Altschul

PLoS Comput. Biol., 2016

Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties.

Andrew F. Neuwald, Stephen F. Altschul

PLoS Comput. Biol., 2016

2014

Evaluating, Comparing, and Interpreting Protein Domain Hierarchies.

Andrew F. Neuwald

J. Comput. Biol., 2014

A Bayesian Sampler for Optimization of Protein Domain Hierarchies.

Andrew F. Neuwald

J. Comput. Biol., 2014

2012

Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures.

Andrew F. Neuwald, Christopher J. Lanczycki, Aron Marchler-Bauer

BMC Bioinform., 2012

2009

Rapid detection, classification and accurate alignment of up to a million or more related protein sequences.

Andrew F. Neuwald

Bioinform., 2009

2004

Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model.

Andrew F. Neuwald, Jun S. Liu

BMC Bioinform., 2004

2000

A Theory of Information with Special Application to Search Problems.

W. John Wilbur, Andrew F. Neuwald

Comput. Chem., 2000

1994

A Gibbs Sampler for the Detection of Subtle Motifs in Multiple Sequences.

Charles E. Lawrence, Stephen F. Altschul, John C. Wootton, Mark S. Boguski, Andrew F. Neuwald, Jun S. Liu

Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994