Robert Clarke
Orcid: 0000-0002-9278-0854
According to our database1,
Robert Clarke
authored at least 89 papers
between 2002 and 2024.
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Bibliography
2024
CAM3.0: determining cell type composition and expression from bulk tissues with fully unsupervised deconvolution.
Bioinform., March, 2024
2023
Reinforcement Learning Derived High-Alpha Aerobatic Manoeuvres for Fixed Wing Operation in Confined Spaces.
Algorithms, 2023
2022
swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution.
Bioinform., 2022
2021
ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements.
PLoS Comput. Biol., 2021
Stroke risk prediction using machine learning: a prospective cohort study of 0.5 million Chinese adults.
J. Am. Medical Informatics Assoc., 2021
ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach.
BMC Bioinform., 2021
IntAPT: integrated assembly of phenotype-specific transcripts from multiple RNA-seq profiles.
Bioinform., 2021
2020
Robotics, 2020
Frontiers Robotics AI, 2020
Visual Odometry Using Pixel Processor Arrays for Unmanned Aerial Systems in GPS Denied Environments.
Frontiers Robotics AI, 2020
debCAM: a bioconductor R package for fully unsupervised deconvolution of complex tissues.
Bioinform., 2020
2019
On-Board Real-Time Trajectory Planning for Fixed Wing Unmanned Aerial Vehicles in Extreme Environments.
Sensors, 2019
Remote sensing and identification of volcanic plumes using fixed-wing UAVs over Volcán de Fuego, Guatemala.
J. Field Robotics, 2019
2018
SparseIso: a novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data.
Bioinform., 2018
CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data.
Bioinform., 2018
2017
DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency.
Bioinform., 2017
PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification.
Bioinform., 2017
2016
Biologically inspired survival analysis based on integrating gene expression as mediator with genomic variants.
Comput. Biol. Medicine, 2016
BMC Bioinform., 2016
Risk prediction for cardiovascular disease using ECG data in the China kadoorie biobank.
Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016
2015
UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.
Bioinform., 2015
KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.
Bioinform., 2015
BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method.
Bioinform., 2015
2014
IEEE ACM Trans. Comput. Biol. Bioinform., 2014
Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks.
BMC Syst. Biol., 2014
BADGE: A novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data.
BMC Bioinform., 2014
AISAIC: a software suite for accurate identification of significant aberrations in cancers.
Bioinform., 2014
Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.
Bioinform., 2014
BSSV: Bayesian based somatic structural variation identification with whole genome DNA-seq data.
Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014
An Observational Analysis of the Range and Extent of Contract Cheating from Online Courses Found on Agency Websites.
Proceedings of the Eighth International Conference on Complex, 2014
A Markov random field-based Bayesian model to identify genes with differential methylation.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2014
Statistical Identification of Co-regulatory Gene Modules using Multiple ChIP-Seq Experiments.
Proceedings of the BIOINFORMATICS 2014, 2014
An Initial Analysis of the Contextual Information Available within Auction Posts on Contract Cheating Agency Websites.
Proceedings of the 28th International Conference on Advanced Information Networking and Applications Workshops, 2014
2013
Reconstruction of Transcriptional Regulatory Networks by Stability-Based Network Component Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013
J. Mach. Learn. Res., 2013
mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks.
BMC Syst. Biol., 2013
Proceedings of the Innovation and Technology in Computer Science Education conference 2013, 2013
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
Reconstructing transcriptional regulatory networks by probabilistic network component analysis.
Proceedings of the ACM Conference on Bioinformatics, 2013
2012
Regulatory component analysis: A semi-blind extraction approach to infer gene regulatory networks with imperfect biological knowledge.
Signal Process., 2012
Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis.
Proceedings of the Bioinformatics Research and Applications - 8th International Symposium, 2012
Sampling-Based Subnetwork Identification from Microarray Data and Protein-Protein Interaction Network.
Proceedings of the 11th International Conference on Machine Learning and Applications, 2012
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012
2011
BMC Syst. Biol., 2011
Motif-guided sparse decomposition of gene expression data for regulatory module identification.
BMC Bioinform., 2011
Bioinform., 2011
PUGSVM: a caBIG<sup>TM</sup> analytical tool for multiclass gene selection and predictive classification.
Bioinform., 2011
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011
2010
Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases.
J. Mach. Learn. Res., 2010
BMC Bioinform., 2010
Multilevel support vector regression analysis to identify condition-specific regulatory networks.
Bioinform., 2010
Identification of Transcriptional Regulatory Networks by Learning the Marginal Function of Outlier Sum Statistic.
Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010
2009
Int. J. Data Min. Bioinform., 2009
Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.
Int. J. Comput. Biol. Drug Des., 2009
Differential dependency network analysis to identify condition-specific topological changes in biological networks.
Bioinform., 2009
A Systems Biology Approach to Identify Affected Regulatory and Signaling Circuits in Protein Interaction Networks.
Proceedings of the International Joint Conferences on Bioinformatics, 2009
2008
caBIG<sup>TM</sup> VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data.
BMC Bioinform., 2008
Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.
BMC Bioinform., 2008
BMC Bioinform., 2008
Knowledge-guided multi-scale independent component analysis for biomarker identification.
BMC Bioinform., 2008
Proceedings of the Bioinformatics Research and Applications, 2008
Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information.
Proceedings of the Bioinformatics Research and Applications, 2008
Proceedings of the Seventh International Conference on Machine Learning and Applications, 2008
Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
Inferring Condition-Specific miRNA-Gene Modules from miRNA and mRNA Profiling Data.
Proceedings of the International Conference on Bioinformatics, 2008
Reliability Analysis of Transcriptional Regulatory Networks.
Proceedings of the International Conference on Bioinformatics, 2008
Proceedings of the AMIA 2008, 2008
2007
EURASIP J. Bioinform. Syst. Biol., 2007
VISDA: an open-source caBIG<sup>TM</sup> analytical tool for data clustering and beyond.
Bioinform., 2007
Proceedings of the Sixth International Conference on Machine Learning and Applications, 2007
Stability-Based Dimension Estimation of ICA with Application to Microarray Data Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007
2006
Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.
Bioinform., 2006
Inferring Network Interactions Using Recurrent Neural Networks and Swarm Intelligence.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006
ModVis: An information visualization tool for gene module discovery.
Proceedings of the ISCA 19th International Conference on Computer Applications in Industry and Engineering, 2006
2005
Proceedings of the Digital Watermarking, 4th International Workshop, 2005
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005
Proceedings of the Advances in Bioinformatics and Its Applications, 2005
2004
Sci. China Ser. F Inf. Sci., 2004
Robust Feature Selection by Weighted Fisher Criterion for Multiclass Prediction in Gene Expression Profiling.
Proceedings of the 17th International Conference on Pattern Recognition, 2004
2003
J. VLSI Signal Process., 2003
Partially-independent component analysis for tissue heterogeneity correction in microarray gene expression analysis.
Proceedings of the NNSP 2003, 2003
2002
IEEE Trans. Inf. Technol. Biomed., 2002