Leena Hilakivi-Clarke
According to our database1,
Leena Hilakivi-Clarke
authored at least 16 papers
between 2011 and 2021.
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Bibliography
2021
ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements.
PLoS Comput. Biol., 2021
ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach.
BMC Bioinform., 2021
IntAPT: integrated assembly of phenotype-specific transcripts from multiple RNA-seq profiles.
Bioinform., 2021
2018
SparseIso: a novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data.
Bioinform., 2018
CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data.
Bioinform., 2018
2017
DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency.
Bioinform., 2017
PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification.
Bioinform., 2017
2015
BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method.
Bioinform., 2015
2014
BADGE: A novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data.
BMC Bioinform., 2014
BSSV: Bayesian based somatic structural variation identification with whole genome DNA-seq data.
Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014
A Markov random field-based Bayesian model to identify genes with differential methylation.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2014
Statistical Identification of Co-regulatory Gene Modules using Multiple ChIP-Seq Experiments.
Proceedings of the BIOINFORMATICS 2014, 2014
2013
mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks.
BMC Syst. Biol., 2013
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
Reconstructing transcriptional regulatory networks by probabilistic network component analysis.
Proceedings of the ACM Conference on Bioinformatics, 2013
2011
Bioinform., 2011