Jianhua Xuan

According to our database1, Jianhua Xuan authored at least 102 papers between 1995 and 2018.

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Bibliography

2018
Tracking Multiple Moving Objects Using Unscented Kalman Filtering Techniques.
CoRR, 2018

SparseIso: a novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data.
Bioinform., 2018

CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data.
Bioinform., 2018

2017
DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency.
Bioinform., 2017

PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification.
Bioinform., 2017

2015
UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.
Bioinform., 2015

KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.
Bioinform., 2015

BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method.
Bioinform., 2015

2014
A feasible roadmap for developing volumetric probability atlas of localized prostate cancer.
CoRR, 2014

Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks.
BMC Syst. Biol., 2014

BADGE: A novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data.
BMC Bioinform., 2014

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.
Bioinform., 2014

BSSV: Bayesian based somatic structural variation identification with whole genome DNA-seq data.
Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014

A Markov random field-based Bayesian model to identify genes with differential methylation.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2014

Statistical Identification of Co-regulatory Gene Modules using Multiple ChIP-Seq Experiments.
Proceedings of the BIOINFORMATICS 2014, 2014

2013
Reconstruction of Transcriptional Regulatory Networks by Stability-Based Network Component Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

The CAM software for nonnegative blind source separation in R-Java.
J. Mach. Learn. Res., 2013

Module-based breast cancer classification.
Int. J. Data Min. Bioinform., 2013

mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks.
BMC Syst. Biol., 2013

A novel statistical approach to identify co-regulatory gene modules.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Reconstructing transcriptional regulatory networks by probabilistic network component analysis.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
Regulatory component analysis: A semi-blind extraction approach to infer gene regulatory networks with imperfect biological knowledge.
Signal Process., 2012

Computational analysis of muscular dystrophy sub-types using a novel integrative scheme.
Neurocomputing, 2012

Integrative Network Analysis to Identify Aberrant Pathway Networks in Ovarian Cancer.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis.
Proceedings of the Bioinformatics Research and Applications - 8th International Symposium, 2012

Sampling-Based Subnetwork Identification from Microarray Data and Protein-Protein Interaction Network.
Proceedings of the 11th International Conference on Machine Learning and Applications, 2012

Detecting aberrant signal transduction pathways from high-throughput data using GIST algorithm.
Proceedings of the 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2012

2011
Identifying cancer biomarkers by network-constrained support vector machines.
BMC Syst. Biol., 2011

Motif-guided sparse decomposition of gene expression data for regulatory module identification.
BMC Bioinform., 2011

DDN: a caBIG<sup>®</sup> analytical tool for differential network analysis.
Bioinform., 2011

PUGSVM: a caBIG<sup>TM</sup> analytical tool for multiclass gene selection and predictive classification.
Bioinform., 2011

GIST: A Gibbs sampler to identify intracellular signal transduction pathways.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

2010
Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases.
J. Mach. Learn. Res., 2010

Knowledge-guided gene ranking by coordinative component analysis.
BMC Bioinform., 2010

Multilevel support vector regression analysis to identify condition-specific regulatory networks.
Bioinform., 2010

Joint segmentation and spiculation detection for ill-defined and spiculated mammographic masses.
Proceedings of the Medical Imaging 2010: Computer-Aided Diagnosis, 2010

Identification of Transcriptional Regulatory Networks by Learning the Marginal Function of Outlier Sum Statistic.
Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010

View reconstruction from images by removing vehicles.
Proceedings of the 2010 First International Workshop on Data Mining for Geoinformatics, 2010

Module-based biomarker discovery in breast cancer.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009
Biomarker identification by knowledge-driven multilevel ICA and motif analysis.
Int. J. Data Min. Bioinform., 2009

Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.
Int. J. Comput. Biol. Drug Des., 2009

Differential dependency network analysis to identify condition-specific topological changes in biological networks.
Bioinform., 2009

Robust Learning-Based Annotation of Medical Radiographs.
Proceedings of the Medical Content-Based Retrieval for Clinical Decision Support, 2009

Multi-level Ground Glass Nodule Detection and Segmentation in CT Lung Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

A Systems Biology Approach to Identify Affected Regulatory and Signaling Circuits in Protein Interaction Networks.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

Enhancing Pathway Based Analysis Using Different Weighting Schemes.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

2008
caBIG<sup>TM</sup> VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data.
BMC Bioinform., 2008

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.
BMC Bioinform., 2008

Motif-directed network component analysis for regulatory network inference.
BMC Bioinform., 2008

Knowledge-guided multi-scale independent component analysis for biomarker identification.
BMC Bioinform., 2008

Deformation estimation and analysis for adaptive radiation therapy.
Proceedings of the Medical Imaging 2008: Image Processing, 2008

Automatic categorization of mammographic masses using BI-RADS as a guidance.
Proceedings of the Medical Imaging 2008: Computer-Aided Diagnosis, 2008

Integrative Network Component Analysis for Regulatory Network Reconstruction.
Proceedings of the Bioinformatics Research and Applications, 2008

Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information.
Proceedings of the Bioinformatics Research and Applications, 2008

Imaging biomarker analysis of rat mammary fat pads and glandular tissues in MRI images.
Proceedings of the 19th International Conference on Pattern Recognition (ICPR 2008), 2008

Network-Constrained Support Vector Machine for Classification.
Proceedings of the Seventh International Conference on Machine Learning and Applications, 2008

3-D Deformation Guided On-Line Modification of Multi-leaf Collimators for Adaptive Radiation Therapy.
Proceedings of the Image Analysis and Recognition, 5th International Conference, 2008

Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

Inferring Condition-Specific miRNA-Gene Modules from miRNA and mRNA Profiling Data.
Proceedings of the International Conference on Bioinformatics, 2008

Reliability Analysis of Transcriptional Regulatory Networks.
Proceedings of the International Conference on Bioinformatics, 2008

2007
Improved Diagnostics Using Polarization Imaging and Artificial Neural Networks.
Int. J. Biomed. Imaging, 2007

Gene Selection for Multiclass Prediction by Weighted Fisher Criterion.
EURASIP J. Bioinform. Syst. Biol., 2007

VISDA: an open-source caBIG<sup>TM</sup> analytical tool for data clustering and beyond.
Bioinform., 2007

Rat Mammary Gland Analysis in T1 Weighted MR Images.
Proceedings of the IAPR Conference on Machine Vision Applications (IAPR MVA 2007), 2007

A preliminary study of content-based mammographic masses retrieval.
Proceedings of the Medical Imaging 2007: Computer-Aided Diagnosis, 2007

Biomarker Identification by Knowledge-Driven Multi-Level ICA and Motif Analysis.
Proceedings of the Sixth International Conference on Machine Learning and Applications, 2007

Stability-Based Dimension Estimation of ICA with Application to Microarray Data Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

Rat Mammary Fat Pad Segmentation and Growth Rate Evaluation in T1 Weighted MR Images.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
Nonrigid Medical Image Registration by Finite-Element Deformable Sheet-Curve Models.
Int. J. Biomed. Imaging, 2006

Modeling and Reconstruction of Mixed Functional and Molecular Patterns.
Int. J. Biomed. Imaging, 2006

Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.
Bioinform., 2006

Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

ModVis: An information visualization tool for gene module discovery.
Proceedings of the ISCA 19th International Conference on Computer Applications in Industry and Engineering, 2006

Learning the Tree of Phenotypes Using Genomic Data and VISDA.
Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

2005
Discontinuity-embedded deformable models for surface reconstruction from range images.
IEEE Signal Process. Lett., 2005

Normalization of Microarray Data by Iterative Nonlinear Regression.
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005

Gene Selection by Weighted Fisher criterion for Multiclass Prediction.
Proceedings of the Advances in Bioinformatics and Its Applications, 2005

2004
Non-Rigid Image Registration by Neural Computation.
J. VLSI Signal Process., 2004

Computed Simultaneous Imaging of Multiple Functional Biomarkers.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Robust Feature Selection by Weighted Fisher Criterion for Multiclass Prediction in Gene Expression Profiling.
Proceedings of the 17th International Conference on Pattern Recognition, 2004

A discontinuity-embedded deformable model for surface modeling.
Proceedings of the Second IASTED International Conference on Circuits, 2004

2003
Discriminatory Mining of Gene Expression Microarray Data.
J. VLSI Signal Process., 2003

Computed simultaneous imaging of multiple biomarkers.
Proceedings of the NNSP 2003, 2003

Partially independent component analysis of tumor heterogeneities by DCE-MRI.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Finite-element deformable sheet-curve models for registration of breast MR images.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Computational intelligence approach for gene expression data mining and classification.
Proceedings of the 2003 IEEE International Conference on Multimedia and Expo, 2003

2002
Mixture of principal axes registration: a neural computation approach.
Proceedings of the Medical Imaging 2002: Image Processing, 2002

MR-image-based tissue analysis and its clinical applications.
Proceedings of the Medical Imaging 2002: Image Processing, 2002

2001
Magnetic resonance image analysis by information theoretic criteria and stochastic site models.
IEEE Trans. Inf. Technol. Biomed., 2001

Mixture of Principal Axes Registration for Change Analysis in Computer-Aided Diagnosis.
Proceedings of the 30th Applied Image Pattern Recognition Workshop (AIPR 2001), 2001

1998
3-D Model Supported Prostrate Biopsy Simulation and Evaluation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1998

A likelihood framework for nonlinear signal processing with finite normal mixtures.
Proceedings of the 9th European Signal Processing Conference, 1998

1997
Surface reconstruction and visualization of the surgical prostate model.
Proceedings of the Medical Imaging 1997: Image Display, 1997

Statistical modeling and visualization of localized prostate cancer.
Proceedings of the Medical Imaging 1997: Image Display, 1997

Dyadic decomposition: a unified perspective on predictive, subband, and wavelet transforms.
Proceedings of the Medical Imaging 1997: Image Display, 1997

A Deformable Surface-Spine Model for 3-D Surface Registration.
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997

Modeling of Wavelet Coefficients in Medical Image Compression.
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997

1996
Information geometry of maximum partial likelihood estimation for channel equalization.
Proceedings of the 1996 IEEE International Conference on Acoustics, 1996

Image quality evaluation for radiation dose optimization in CR by shape and wavelet analyses.
Proceedings of the 8th European Signal Processing Conference, 1996

1995
Segmentation of magnetic resonance brain image: integrating region growing and edge detection.
Proceedings of the Proceedings 1995 International Conference on Image Processing, 1995


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