Jianhua Xuan
Orcid: 0000-0001-7256-1374Affiliations:
- Virginia Tech, Blacksburg, Virginia, USA
According to our database1,
Jianhua Xuan
authored at least 108 papers
between 1995 and 2021.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on orcid.org
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on ece.vt.edu
On csauthors.net:
Bibliography
2021
ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements.
PLoS Comput. Biol., 2021
ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach.
BMC Bioinform., 2021
IntAPT: integrated assembly of phenotype-specific transcripts from multiple RNA-seq profiles.
Bioinform., 2021
2018
CoRR, 2018
SparseIso: a novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data.
Bioinform., 2018
CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data.
Bioinform., 2018
2017
DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency.
Bioinform., 2017
PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification.
Bioinform., 2017
2015
UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.
Bioinform., 2015
KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.
Bioinform., 2015
BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method.
Bioinform., 2015
2014
A feasible roadmap for developing volumetric probability atlas of localized prostate cancer.
CoRR, 2014
Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks.
BMC Syst. Biol., 2014
BADGE: A novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data.
BMC Bioinform., 2014
Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.
Bioinform., 2014
BSSV: Bayesian based somatic structural variation identification with whole genome DNA-seq data.
Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014
A Markov random field-based Bayesian model to identify genes with differential methylation.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2014
Statistical Identification of Co-regulatory Gene Modules using Multiple ChIP-Seq Experiments.
Proceedings of the BIOINFORMATICS 2014, 2014
2013
Reconstruction of Transcriptional Regulatory Networks by Stability-Based Network Component Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013
J. Mach. Learn. Res., 2013
mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks.
BMC Syst. Biol., 2013
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
Reconstructing transcriptional regulatory networks by probabilistic network component analysis.
Proceedings of the ACM Conference on Bioinformatics, 2013
2012
Regulatory component analysis: A semi-blind extraction approach to infer gene regulatory networks with imperfect biological knowledge.
Signal Process., 2012
Computational analysis of muscular dystrophy sub-types using a novel integrative scheme.
Neurocomputing, 2012
Integrative Network Analysis to Identify Aberrant Pathway Networks in Ovarian Cancer.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012
Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis.
Proceedings of the Bioinformatics Research and Applications - 8th International Symposium, 2012
Sampling-Based Subnetwork Identification from Microarray Data and Protein-Protein Interaction Network.
Proceedings of the 11th International Conference on Machine Learning and Applications, 2012
Detecting aberrant signal transduction pathways from high-throughput data using GIST algorithm.
Proceedings of the 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2012
2011
BMC Syst. Biol., 2011
Motif-guided sparse decomposition of gene expression data for regulatory module identification.
BMC Bioinform., 2011
Bioinform., 2011
PUGSVM: a caBIG<sup>TM</sup> analytical tool for multiclass gene selection and predictive classification.
Bioinform., 2011
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011
2010
Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases.
J. Mach. Learn. Res., 2010
BMC Bioinform., 2010
Multilevel support vector regression analysis to identify condition-specific regulatory networks.
Bioinform., 2010
Joint segmentation and spiculation detection for ill-defined and spiculated mammographic masses.
Proceedings of the Medical Imaging 2010: Computer-Aided Diagnosis, 2010
Identification of Transcriptional Regulatory Networks by Learning the Marginal Function of Outlier Sum Statistic.
Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010
Proceedings of the 2010 First International Workshop on Data Mining for Geoinformatics, 2010
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010
2009
Int. J. Data Min. Bioinform., 2009
Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.
Int. J. Comput. Biol. Drug Des., 2009
Differential dependency network analysis to identify condition-specific topological changes in biological networks.
Bioinform., 2009
Proceedings of the Medical Content-Based Retrieval for Clinical Decision Support, 2009
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009
A Systems Biology Approach to Identify Affected Regulatory and Signaling Circuits in Protein Interaction Networks.
Proceedings of the International Joint Conferences on Bioinformatics, 2009
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009
2008
caBIG<sup>TM</sup> VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data.
BMC Bioinform., 2008
Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.
BMC Bioinform., 2008
BMC Bioinform., 2008
Knowledge-guided multi-scale independent component analysis for biomarker identification.
BMC Bioinform., 2008
Proceedings of the Medical Imaging 2008: Image Processing, 2008
Proceedings of the Medical Imaging 2008: Computer-Aided Diagnosis, 2008
Proceedings of the Bioinformatics Research and Applications, 2008
Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information.
Proceedings of the Bioinformatics Research and Applications, 2008
Imaging biomarker analysis of rat mammary fat pads and glandular tissues in MRI images.
Proceedings of the 19th International Conference on Pattern Recognition (ICPR 2008), 2008
Proceedings of the Seventh International Conference on Machine Learning and Applications, 2008
3-D Deformation Guided On-Line Modification of Multi-leaf Collimators for Adaptive Radiation Therapy.
Proceedings of the Image Analysis and Recognition, 5th International Conference, 2008
Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
Inferring Condition-Specific miRNA-Gene Modules from miRNA and mRNA Profiling Data.
Proceedings of the International Conference on Bioinformatics, 2008
Reliability Analysis of Transcriptional Regulatory Networks.
Proceedings of the International Conference on Bioinformatics, 2008
2007
Int. J. Biomed. Imaging, 2007
EURASIP J. Bioinform. Syst. Biol., 2007
VISDA: an open-source caBIG<sup>TM</sup> analytical tool for data clustering and beyond.
Bioinform., 2007
Proceedings of the IAPR Conference on Machine Vision Applications (IAPR MVA 2007), 2007
Proceedings of the Medical Imaging 2007: Computer-Aided Diagnosis, 2007
Proceedings of the Sixth International Conference on Machine Learning and Applications, 2007
Stability-Based Dimension Estimation of ICA with Application to Microarray Data Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007
Rat Mammary Fat Pad Segmentation and Growth Rate Evaluation in T1 Weighted MR Images.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
2006
Int. J. Biomed. Imaging, 2006
Int. J. Biomed. Imaging, 2006
Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.
Bioinform., 2006
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
Inferring Network Interactions Using Recurrent Neural Networks and Swarm Intelligence.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006
ModVis: An information visualization tool for gene module discovery.
Proceedings of the ISCA 19th International Conference on Computer Applications in Industry and Engineering, 2006
Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006
2005
Discontinuity-embedded deformable models for surface reconstruction from range images.
IEEE Signal Process. Lett., 2005
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005
Proceedings of the Advances in Bioinformatics and Its Applications, 2005
2004
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004
Robust Feature Selection by Weighted Fisher Criterion for Multiclass Prediction in Gene Expression Profiling.
Proceedings of the 17th International Conference on Pattern Recognition, 2004
A discontinuity-embedded deformable model for surface modeling.
Proceedings of the Second IASTED International Conference on Circuits, 2004
2003
J. VLSI Signal Process., 2003
Proceedings of the NNSP 2003, 2003
Proceedings of the Medical Imaging 2003: Image Processing, 2003
Proceedings of the Medical Imaging 2003: Image Processing, 2003
Computational intelligence approach for gene expression data mining and classification.
Proceedings of the 2003 IEEE International Conference on Multimedia and Expo, 2003
2002
Proceedings of the Medical Imaging 2002: Image Processing, 2002
Proceedings of the Medical Imaging 2002: Image Processing, 2002
2001
Magnetic resonance image analysis by information theoretic criteria and stochastic site models.
IEEE Trans. Inf. Technol. Biomed., 2001
Mixture of Principal Axes Registration for Change Analysis in Computer-Aided Diagnosis.
Proceedings of the 30th Applied Image Pattern Recognition Workshop (AIPR 2001), 2001
1998
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1998
Proceedings of the 9th European Signal Processing Conference, 1998
1997
Proceedings of the Medical Imaging 1997: Image Display, 1997
Proceedings of the Medical Imaging 1997: Image Display, 1997
Dyadic decomposition: a unified perspective on predictive, subband, and wavelet transforms.
Proceedings of the Medical Imaging 1997: Image Display, 1997
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997
1996
Information geometry of maximum partial likelihood estimation for channel equalization.
Proceedings of the 1996 IEEE International Conference on Acoustics, 1996
Image quality evaluation for radiation dose optimization in CR by shape and wavelet analyses.
Proceedings of the 8th European Signal Processing Conference, 1996
1995
Segmentation of magnetic resonance brain image: integrating region growing and edge detection.
Proceedings of the Proceedings 1995 International Conference on Image Processing, 1995