Andrew W. McPherson

According to our database, Andrew W. McPherson authored at least 10 papers between 2009 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

CINner: Modeling and simulation of chromosomal instability in cancer at single-cell resolution.

Khanh N. Dinh, Ignacio Vázquez-García, Andrew Chan, Rhea Malhotra, Adam Weiner, Andrew W. McPherson, Simon Tavaré

PLoS Comput. Biol., 2025

2018

Computational identification of micro-structural variations and their proteogenomic consequences in cancer.

Yen-Yi Lin, Alexander Gawronski, Faraz Hach, Sujun Li, Ibrahim Numanagic, Iman Sarrafi, Swati Mishra, Andrew W. McPherson, Colin C. Collins, Milan Radovich, Haixu Tang, Süleyman Cenk Sahinalp

Bioinform., 2018

2015

Joint Inference of Genome Structure and Content in Heterogeneous Tumour Samples.

Andrew W. McPherson, Andrew Roth, Gavin Ha, Sohrab P. Shah, Cédric Chauve, Süleyman Cenk Sahinalp

CoRR, 2015

Clonality inference in multiple tumor samples using phylogeny.

Salem Malikic, Andrew W. McPherson, Nilgun Donmez, S. Cenk Sahinalp

Bioinform., 2015

Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples.

Andrew W. McPherson, Andrew Roth, Cédric Chauve, Süleyman Cenk Sahinalp

Proceedings of the Research in Computational Molecular Biology, 2015

2012

Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing.

Andrew W. McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab P. Shah, Colin C. Collins, Süleyman Cenk Sahinalp

Proceedings of the Research in Computational Molecular Biology, 2012

2011

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data.

Andrew W. McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G. F. Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A. Marra, Martin Hirst, Torsten O. Nielsen, Süleyman Cenk Sahinalp, David G. Huntsman, Sohrab P. Shah

PLoS Comput. Biol., 2011

Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.

Andrew W. McPherson, Chunxiao Wu, Iman Hajirasouliha, Fereydoun Hormozdiari, Faraz Hach, Anna Lapuk, Stanislav Volik, Sohrab P. Shah, Colin C. Collins, Süleyman Cenk Sahinalp

Bioinform., 2011

Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes.

Fereydoun Hormozdiari, Iman Hajirasouliha, Andrew W. McPherson, Evan E. Eichler, Süleyman Cenk Sahinalp

Proceedings of the Research in Computational Molecular Biology, 2011

2009

Prediction of Contiguous Regions in the Amniote Ancestral Genome.

Aïda Ouangraoua, Frédéric Boyer, Andrew W. McPherson, Eric Tannier, Cédric Chauve

Proceedings of the Bioinformatics Research and Applications, 5th International Symposium, 2009